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Answer: Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
5 weeks ago by Pierre Lindenbaum 161k
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323
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Comment: Comment: True variants selection
5 weeks ago by Pierre Lindenbaum 161k
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193
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Comment: Comment: How to reveal real AF of variant if duplicates can't be removed (such as in ampl
5 weeks ago by Pierre Lindenbaum 161k
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200
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Comment: Comment: Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
5 weeks ago by Pierre Lindenbaum 161k
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271
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Comment: Comment: Finding variants within a subset of a BAM file
5 weeks ago by Pierre Lindenbaum 161k
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271
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Answer: Answer: Finding variants within a subset of a BAM file
5 weeks ago by Pierre Lindenbaum 161k
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270
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Comment: Comment: Help with generating annotation database for dog genome to use in ANNOVAR for v
5 weeks ago by Pierre Lindenbaum 161k
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238
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Comment: Comment: Can't figure out plink --sample-diff
5 weeks ago by Pierre Lindenbaum 161k
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485
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Answer: Answer: Downsampling long-read BAM files
5 weeks ago by Pierre Lindenbaum 161k
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483
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Answer: Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
5 weeks ago by Pierre Lindenbaum 161k
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483
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Comment: Comment: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
5 weeks ago by Pierre Lindenbaum 161k
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724
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
5 weeks ago by Pierre Lindenbaum 161k
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338
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Comment: Comment: Using GPUs in snakemake
5 weeks ago by Pierre Lindenbaum 161k
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338
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Comment: Comment: Using GPUs in snakemake
5 weeks ago by Pierre Lindenbaum 161k
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327
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Comment: Comment: Ubuntu storage space is decreasing automatically
5 weeks ago by Pierre Lindenbaum 161k
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327
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Comment: Comment: Ubuntu storage space is decreasing automatically
5 weeks ago by Pierre Lindenbaum 161k
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157
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Answer: Answer: BCFTools install vcfmerge.o error
5 weeks ago by Pierre Lindenbaum 161k
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374
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Comment: Comment: What is the samtools flag used in bamPEFragment?
5 weeks ago by Pierre Lindenbaum 161k
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233
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Answer: Answer: small RNA creating .bam from .sam file
5 weeks ago by Pierre Lindenbaum 161k
1
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822
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Comment: Comment: bash script
5 weeks ago by Pierre Lindenbaum 161k
1
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278
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Answer: Answer: latest dbSNP (ncbi) which genome assembly
5 weeks ago by Pierre Lindenbaum 161k
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184
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Comment: Comment: How do I run fastq-dump on multiple prefetched files at once?
5 weeks ago by Pierre Lindenbaum 161k
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292
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Comment: Comment: Regions not clear in VCF
5 weeks ago by Pierre Lindenbaum 161k
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292
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Comment: Comment: Regions not clear in VCF
5 weeks ago by Pierre Lindenbaum 161k
1
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422
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Comment: Comment: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
5 weeks ago by Pierre Lindenbaum 161k
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422
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Answer: Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
5 weeks ago by Pierre Lindenbaum 161k
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380
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Comment: Comment: Help with finding Genomic coordinates and exon they belong to
5 weeks ago by Pierre Lindenbaum 161k
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380
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Comment: Comment: Help with finding Genomic coordinates and exon they belong to
5 weeks ago by Pierre Lindenbaum 161k
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572
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Comment: Comment: Artificial deletion in bam
5 weeks ago by Pierre Lindenbaum 161k
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1
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635
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Comment: Comment: seg fault, core dumped with manta 1.6.0
5 weeks ago by Pierre Lindenbaum 161k
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670
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Comment: Comment: The bioinformatics paper reappears, but the results are significantly different
6 weeks ago by Pierre Lindenbaum 161k
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572
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Comment: Comment: Artificial deletion in bam
6 weeks ago by Pierre Lindenbaum 161k
2
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2
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572
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Answer: Answer: Artificial deletion in bam
6 weeks ago by Pierre Lindenbaum 161k
1
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266
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Comment: Comment: Trying to write bwa mem -> samtools view -> samtools sort loop
6 weeks ago by Pierre Lindenbaum 161k
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379
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Comment: Comment: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by Pierre Lindenbaum 161k
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372
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Comment: Comment: Incongruencies in GT assignment by Freebayes
6 weeks ago by Pierre Lindenbaum 161k
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379
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Comment: Comment: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by Pierre Lindenbaum 161k
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372
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Comment: Comment: Incongruencies in GT assignment by Freebayes
6 weeks ago by Pierre Lindenbaum 161k
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1
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621
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Comment: Comment: FreeBayes encountered a sudden error
6 weeks ago by Pierre Lindenbaum 161k
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605
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Comment: Comment: frequency of each variant per sample
6 weeks ago by Pierre Lindenbaum 161k
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1
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621
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Comment: Comment: FreeBayes encountered a sudden error
6 weeks ago by Pierre Lindenbaum 161k
2
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1
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379
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Answer: Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by Pierre Lindenbaum 161k
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286
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by Pierre Lindenbaum 161k
2
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1
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286
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Answer: Answer: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by Pierre Lindenbaum 161k
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1
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605
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Comment: Comment: frequency of each variant per sample
6 weeks ago by Pierre Lindenbaum 161k
1
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1
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605
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Answer: Answer: frequency of each variant per sample
6 weeks ago by Pierre Lindenbaum 161k
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250
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Comment: Comment: Data table for LOEUF loss-of-function observed/expected upper bound fraction
6 weeks ago by Pierre Lindenbaum 161k
1
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0
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279
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Comment: Comment: R/python script to extract Subcellular locations (Compartments) from Genecards?
6 weeks ago by Pierre Lindenbaum 161k
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261
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Comment: Comment: Uniprotkb's Disease & Variants section out-of-date
6 weeks ago by Pierre Lindenbaum 161k
1
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207
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Comment: Comment: R/Python script to collect allele frequency for batch of SNPs in gnomAD database
6 weeks ago by Pierre Lindenbaum 161k
12,469 results • Page 3 of 250
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