Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
4
votes
0
replies
1.2k
views
Answer: Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
7 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
373
views
Answer: Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
7 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
407
views
Answer: Answer: calculate mismatch rate from VCF file
7 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
322
views
Answer: Answer: Confirm if a genome position falls into a coding exon
7 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
428
views
Answer: Answer: 0-based coordinates from samtools depth
7 weeks ago by Pierre Lindenbaum 161k
3
votes
2
replies
735
views
Answer: Answer: Variant calling of GBS data
7 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
733
views
Answer: Answer: How to filter Illumina Nirvana variant annotation?
7 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
415
views
Answer: Answer: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
7 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
558
views
Answer: Answer: I have a bed file containing genomic locations and A or B compartment annotation
7 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
294
views
Answer: Answer: Annotating indels and SNVs
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
400
views
Answer: Answer: HISAT2 installation issue
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
451
views
Answer: Answer: bcftools select sites with multiple combinatio ns of FILTER column
8 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
638
views
Answer: Answer: Fine-tuning NCBI taxid / taxidlist
8 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
337
views
Answer: Answer: Annotate genes from gtf file to vcf file
8 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
544
views
Answer: Answer: bedToBigBed error, what am I doing wrong?
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
437
views
Answer: Answer: Biostrings extract read
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
459
views
Answer: Answer: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
349
views
Answer: Answer: error in wigToBigWig while converting mappability to bedgraph
8 weeks ago by Pierre Lindenbaum 161k
3
votes
0
replies
258
views
Answer: Answer: Problem with .bed file
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
392
views
Answer: Answer: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
8 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
245
views
Answer: Answer: converting VCF files to TSV file
9 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
291
views
Answer: Answer: Bed file filtering
9 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
274
views
Answer: Answer: Query Name too long - samtools
9 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
277
views
Answer: Answer: Merging 2 VCF files using bcftools, however how should I update the fields accor
9 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
582
views
Answer: Answer: i'm trying to use STAR and there is a problem...
9 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
693
views
Answer: Answer: Warning: Expected at least 2 parts in FORMAT entry: ID=GP,Number=3,Type=Float,De
9 weeks ago by Pierre Lindenbaum 161k
3
votes
1
reply
437
views
Answer: Answer: How to merge VCF files from multiple samples and remove individual level informa
10 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
2.5k
views
Answer: Answer: Coovar: Co-Occurring Variant Analyzer
10 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
476
views
Answer: Answer: Issues filtering VCF file with bcftools/vcftools
10 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
421
views
Answer: Answer: Uploading HiC track on UCSC browser
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
230
views
Answer: Answer: How does one create a custom VCF file?
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
420
views
Answer: Answer: blast in python
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
253
views
Answer: Answer: How to get population specific SNPs from a vcf file
10 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
486
views
Answer: Answer: Selection of GTF file from gencode
10 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
371
views
Answer: Answer: GnomAD
10 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
497
views
Answer: Answer: CollectVariantCallingMetrics Error
11 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
401
views
Answer: Answer: how to remove FORMAT field in vcf field
11 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
343
views
Answer: Answer: get flanking sequences of a SNP in a vcf
11 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
417
views
Answer: Answer: Would a string composed of `#CHROM`, `POS`, `REF` and `ALT` uniquely identify a
11 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
536
views
Answer: Answer: Maximum returned records using epost?
12 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
618
views
Answer: Answer: Bcftools view error
12 weeks ago by Pierre Lindenbaum 161k
2
votes
0
replies
823
views
Answer: Answer: It's my first time doing alignment and i keep getting this message, is this norm
12 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
661
views
Answer: Answer: Separating bam file based on directionality / samtools view -F/-f option(s) appe
12 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
468
views
Answer: Answer: genomecov -d -pc -ibam showing no coverage for every position
3 months ago by Pierre Lindenbaum 161k
5
votes
0
replies
535
views
Answer: Answer: samtools index error - "Unsorted positions on sequence" even though file is sort
3 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
541
views
Answer: Answer: Extract SNPs present in mutants
3 months ago by Pierre Lindenbaum 161k
3
votes
1
reply
370
views
Answer: Answer: How to exclude reads from a fastq file, using a list of read names?
3 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
676
views
Answer: Answer: Split large deletion D in CIGAR string and filtering reads
3 months ago by Pierre Lindenbaum 161k
4
votes
1
reply
372
views
Answer: Answer: line 1: syntax error near unexpected token `Rsubread
3 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
604
views
Answer: Answer: Creating a csv in a specific format from FASTQ file names
3 months ago by Pierre Lindenbaum 161k
4,703 results • Page 2 of 95
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6