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answers
1
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1
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627
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Answer:
Answer: Create a new bed file with all pairwise combinations between two other bed files
5 days ago by
Pierre Lindenbaum
161k
2
votes
1
reply
344
views
Answer:
Answer: Why gatk VariantAnnotator required bam and coverage files
6 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
344
views
Answer:
Answer: Figures are disappeared from html report of SnpEff
6 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
441
views
Answer:
Answer: Fetch table from clinvar database according to a list of rsid
6 days ago by
Pierre Lindenbaum
161k
1
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0
replies
232
views
Answer:
Answer: HaplotypeCaller - only SNPs
8 days ago by
Pierre Lindenbaum
161k
0
votes
1
reply
261
views
Answer:
Answer: Difference between samtools "-f 9" and "-f 11"
8 days ago by
Pierre Lindenbaum
161k
0
votes
1
reply
349
views
Answer:
Answer: How to slice a gvcf file with tabix?
9 days ago by
Pierre Lindenbaum
161k
1
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0
replies
239
views
Answer:
Answer: Getting the nucleotide sequence of proteins, having their UniProt IDs
9 days ago by
Pierre Lindenbaum
161k
3
votes
1
reply
517
views
Answer:
Answer: Filtering sam or bam file with maximum matching region
11 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
688
views
Answer:
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
12 days ago by
Pierre Lindenbaum
161k
2
votes
1
reply
593
views
Answer:
Answer: Indexing the Reference Genome is not done in STAR
13 days ago by
Pierre Lindenbaum
161k
0
votes
1
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878
views
Answer:
Answer: Questions about a bug when transferring cram file to bam file
14 days ago by
Pierre Lindenbaum
161k
1
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0
replies
458
views
Answer:
Answer: Sheep reference genome remapping coordinates
14 days ago by
Pierre Lindenbaum
161k
1
vote
1
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312
views
Answer:
Answer: Bwa sampe - BGI
15 days ago by
Pierre Lindenbaum
161k
0
votes
1
reply
404
views
Answer:
Answer: Best way to deal with overlapping read names in merged BAM files
16 days ago by
Pierre Lindenbaum
161k
0
votes
1
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254
views
Answer:
Answer: CombineGVCFs vs. MergeVcfs
16 days ago by
Pierre Lindenbaum
161k
2
votes
0
replies
235
views
Answer:
Answer: Problem with Sniffles pipeline and SV calling help
16 days ago by
Pierre Lindenbaum
161k
2
votes
2
replies
393
views
Answer:
Answer: How to download large-scale cDNA sequences from NCBI effectively ?
18 days ago by
Pierre Lindenbaum
161k
4
votes
1
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579
views
Answer:
Answer: Can you suggest a protein PDB that has two chainst but only 50 total number of a
19 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
328
views
Answer:
Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
20 days ago by
Pierre Lindenbaum
161k
1
vote
0
replies
213
views
Answer:
Answer: Finding variants within a subset of a BAM file
21 days ago by
Pierre Lindenbaum
161k
0
votes
0
replies
274
views
Answer:
Answer: Downsampling long-read BAM files
21 days ago by
Pierre Lindenbaum
161k
1
vote
0
replies
447
views
Answer:
Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
22 days ago by
Pierre Lindenbaum
161k
0
votes
0
replies
146
views
Answer:
Answer: BCFTools install vcfmerge.o error
22 days ago by
Pierre Lindenbaum
161k
0
votes
0
replies
218
views
Answer:
Answer: small RNA creating .bam from .sam file
23 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
256
views
Answer:
Answer: latest dbSNP (ncbi) which genome assembly
23 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
383
views
Answer:
Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
25 days ago by
Pierre Lindenbaum
161k
2
votes
2
replies
541
views
Answer:
Answer: Artificial deletion in bam
27 days ago by
Pierre Lindenbaum
161k
2
votes
1
reply
353
views
Answer:
Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
27 days ago by
Pierre Lindenbaum
161k
2
votes
1
reply
267
views
Answer:
Answer: filtering VCF sites and impose whatever excluded ad missing
27 days ago by
Pierre Lindenbaum
161k
1
vote
1
reply
564
views
Answer:
Answer: frequency of each variant per sample
27 days ago by
Pierre Lindenbaum
161k
2
votes
0
replies
345
views
Answer:
Answer: Problems with Nextflow to run NanoRtax Pipeline
updated 27 days ago by
colindaven
6.4k • written 28 days ago by
Pierre Lindenbaum
161k
0
votes
1
reply
275
views
Answer:
Answer: Multiple iterations of sorted bam output files with picard SortSam
29 days ago by
Pierre Lindenbaum
161k
0
votes
0
replies
231
views
Answer:
Answer: Using nextflow for performing quality control and trimming of reads
29 days ago by
Pierre Lindenbaum
161k
0
votes
1
reply
315
views
Answer:
Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
4 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
294
views
Answer:
Answer: BioGRID REST - How to retrieve all the protein interactions?
4 weeks ago by
Pierre Lindenbaum
161k
4
votes
0
replies
1.1k
views
Answer:
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
4 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
366
views
Answer:
Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
4 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
388
views
Answer:
Answer: calculate mismatch rate from VCF file
4 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
311
views
Answer:
Answer: Confirm if a genome position falls into a coding exon
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
411
views
Answer:
Answer: 0-based coordinates from samtools depth
5 weeks ago by
Pierre Lindenbaum
161k
3
votes
2
replies
689
views
Answer:
Answer: Variant calling of GBS data
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
707
views
Answer:
Answer: How to filter Illumina Nirvana variant annotation?
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
396
views
Answer:
Answer: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
541
views
Answer:
Answer: I have a bed file containing genomic locations and A or B compartment annotation
5 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
287
views
Answer:
Answer: Annotating indels and SNVs
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
387
views
Answer:
Answer: HISAT2 installation issue
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
432
views
Answer:
Answer: bcftools select sites with multiple combinatio ns of FILTER column
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
606
views
Answer:
Answer: Fine-tuning NCBI taxid / taxidlist
6 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
315
views
Answer:
Answer: Annotate genes from gtf file to vcf file
6 weeks ago by
Pierre Lindenbaum
161k
4,689 results • Page
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