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373
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Comment: Comment: genome assembly records not present in assembly_summary.txt
21 days ago by sapuizait ▴ 10
3
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3
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373
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genome assembly records not present in assembly_summary.txt
ncbi bacteria assembly
updated 22 days ago by 142k • written 22 days ago by ▴ 10
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0
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1.2k
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Comment: Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
3 months ago by sapuizait ▴ 10
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0
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427
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Comment: Comment: many taxa and many seqs phylogeny
4 months ago by sapuizait ▴ 10
2
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2
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427
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many taxa and many seqs phylogeny
raxML fasttree phylogeny
4 months ago by sapuizait ▴ 10
5
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1
reply
442
views
samtools extract the non-specified region
samtools
updated 4 months ago by 43k • written 4 months ago by ▴ 10
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1.1k
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Comment: Comment: more reads in metagenomic samples after 'removing host reads'
8 months ago by sapuizait ▴ 10
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0
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1.1k
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Comment: Comment: more reads in metagenomic samples after 'removing host reads'
8 months ago by sapuizait ▴ 10
0
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1
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1.1k
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Comment: Comment: more reads in metagenomic samples after 'removing host reads'
8 months ago by sapuizait ▴ 10
0
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1
reply
1.1k
views
Comment: Comment: more reads in metagenomic samples after 'removing host reads'
updated 8 months ago by 43k • written 8 months ago by ▴ 10
0
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0
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1.1k
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Comment: Comment: more reads in metagenomic samples after 'removing host reads'
8 months ago by sapuizait ▴ 10
1
vote
9
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1.1k
views
more reads in metagenomic samples after 'removing host reads'
bowtie2 samtools
updated 8 months ago by 142k • written 8 months ago by ▴ 10
0
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1
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756
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Comment: Comment: database for better classification of illumina contigs
15 months ago by sapuizait ▴ 10
1
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3
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756
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database for better classification of illumina contigs
classification illumina contigs NR
updated 15 months ago by ★ 1.2k • written 15 months ago by ▴ 10
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0
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944
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Comment: Comment: why merge assemblies?
2.5 years ago by sapuizait ▴ 10
2
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3
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944
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why merge assemblies?
assembly merge illumuna data
2.5 years ago by sapuizait ▴ 10
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0
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2.1k
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Comment: Comment: kegg IDs to pathways in R
2.6 years ago by sapuizait ▴ 10
0
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0
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2.1k
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Comment: Comment: kegg IDs to pathways in R
2.6 years ago by sapuizait ▴ 10
2
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4
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2.1k
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kegg IDs to pathways in R
R KEGG list pathways
2.6 years ago by sapuizait ▴ 10
0
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0
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1.1k
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Comment: Comment: convert detailed alignment format to fasta
2.8 years ago by sapuizait ▴ 10
0
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1
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1.1k
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Comment: Comment: convert detailed alignment format to fasta
updated 2.8 years ago by 161k • written 2.8 years ago by ▴ 10
1
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4
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1.1k
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convert detailed alignment format to fasta
alignment
updated 10 months ago by 43k • written 2.8 years ago by ▴ 10
0
votes
1
reply
543
views
inexpensive method to detect SNPs in entire bacterial genomes
bacteria SNPs RFLP genome
updated 2.8 years ago by ★ 27k • written 2.8 years ago by ▴ 10
0
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0
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475
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need advice for comparing fragment counts of genes across multiple WGS metagenomes
WGS normalization KMA
3.2 years ago by sapuizait ▴ 10
0
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0
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1.6k
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Comment: C: cannot download refseq genomes
3.2 years ago by sapuizait ▴ 10
0
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0
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1.6k
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Comment: C: cannot download refseq genomes
3.2 years ago by sapuizait ▴ 10
4
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6
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1.6k
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cannot download refseq genomes
refseq
updated 14 months ago by 43k • written 3.2 years ago by ▴ 10
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1
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1.6k
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Comment: C: cannot download refseq genomes
3.2 years ago by sapuizait ▴ 10
3
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7
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1.3k
views
Has anyone heard the term data warehousing in genomics before?
data warehouse
updated 3.2 years ago by • 0 • written 5.5 years ago by ▴ 10
0
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0
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669
views
recover IMG ids from JGI site
JGI IMG ids
updated 3.3 years ago by 15k • written 3.3 years ago by ▴ 10
0
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0
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3.5k
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Comment: A: How/Where do I find mapped GO terms in EggNOG (preferably via FTP download)?
updated 3.8 years ago by 11k • written 4.3 years ago by ▴ 10
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0
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9.0k
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Answer: Answer: RNASeq user experience with Novogene?
updated 17 months ago by 43k • written 3.9 years ago by ▴ 10
0
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0
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9.0k
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Comment: C: RNASeq user experience with Novogene?
3.9 years ago by sapuizait ▴ 10
0
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0
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661
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diamond (blast) exit codes
diamond exit codes
4.2 years ago by sapuizait ▴ 10
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0
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5.7k
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Comment: A: Shotgun rarefactions - metagenomics (microbiome), MetaPhlAn2
4.3 years ago by sapuizait ▴ 10
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0
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1.3k
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Answer: A: Has anyone heard the term data warehousing in genomics before?
5.5 years ago by sapuizait ▴ 10
0
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1
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1.3k
views
Comment: C: Has anyone heard the term data warehousing in genomics before?
5.5 years ago by sapuizait ▴ 10
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