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Answer: Answer: How can I get polyA position and coverage from polyA(+)RNASeq data?
20 months ago by benformatics 3.9k
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548
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Answer: Answer: Calculate PSI in gtf files in python
20 months ago by benformatics 3.9k
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588
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Answer: Answer: Do LoF/GoF count toward transcript count?
20 months ago by benformatics 3.9k
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620
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Answer: Answer: R programming
20 months ago by benformatics 3.9k
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1.4k
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Answer: Answer: How to delete all numbers after dot in a column in R?
22 months ago by benformatics 3.9k
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3
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4.2k
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Answer: Answer: Extract reads from BAM file with known variant
22 months ago by benformatics 3.9k
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646
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Answer: Answer: GRanges strand identification
24 months ago by benformatics 3.9k
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2.6k
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Answer: Answer: What counts as a valid biological replicate in single cell RNAseq?
24 months ago by benformatics 3.9k
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1.6k
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Answer: Answer: Is it possible to calculate TPM using 10X Genomics public data?
24 months ago by benformatics 3.9k
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1.8k
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Answer: Answer: Read counts an order of magnitude higher on one chromosome
2.0 years ago by benformatics 3.9k
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1.7k
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Answer: Answer: Amino Acid identity matrix help
2.0 years ago by benformatics 3.9k
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473
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Answer: Answer: Retrieving starting/ending base cordinates and orientations of genes from TAIR u
2.0 years ago by benformatics 3.9k
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880
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Answer: Answer: What's the difference between library diversity and unique molecules?
2.1 years ago by benformatics 3.9k
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1.9k
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Answer: Answer: Pool or not to pool
2.2 years ago by benformatics 3.9k
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1
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3.2k
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Answer: Answer: ATAC-seq fragment size distribution - huge spike at 150 bp
2.2 years ago by benformatics 3.9k
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722
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.2 years ago by benformatics 3.9k
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1.4k
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Answer: Answer: understanding how cutadapt trims
2.3 years ago by benformatics 3.9k
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922
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Answer: Answer: Output splicing for alignment with gff or gtf
2.3 years ago by benformatics 3.9k
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8.4k
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Answer: Answer: Adding optional tags to a BAM file
2.4 years ago by benformatics 3.9k
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3
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1.9k
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Answer: Answer: Data Manipulation
2.6 years ago by benformatics 3.9k
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1.9k
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Answer: Answer: How to quantify piRNAs ?
2.6 years ago by benformatics 3.9k
2
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1
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858
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Answer: Answer: Germline Cancer Mutations
2.7 years ago by benformatics 3.9k
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1.8k
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Answer: Answer: Good or bad idea to annotate with newer genome build?
2.7 years ago by benformatics 3.9k
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809
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Answer: Answer: R package for structural variation representation ?
2.7 years ago by benformatics 3.9k
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3.3k
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Answer: Answer: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.7 years ago by benformatics 3.9k
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3.8k
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Answer: Answer: How to solve duplicate rownames error on R
2.7 years ago by benformatics 3.9k
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3.2k
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Answer: Answer: Is it possible to count lines of fastq.gz file in R ?
2.7 years ago by benformatics 3.9k
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3.2k
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Answer: Answer: Is it possible to count lines of fastq.gz file in R ?
2.7 years ago by benformatics 3.9k
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1.3k
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Answer: Answer: Mapping unique GO term description given a specific GO id
2.7 years ago by benformatics 3.9k
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1.3k
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Answer: Answer: should barcode in scRNAseq be deleted when demultiplexing
2.8 years ago by benformatics 3.9k
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2.1k
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Answer: Answer: Filtering lowly expressed genes
2.8 years ago by benformatics 3.9k
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1.2k
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Answer: Answer: Problems with fragment length distribution output with Salmon
2.8 years ago by benformatics 3.9k
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2.6k
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Answer: Answer: R Programming
2.8 years ago by benformatics 3.9k
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2.1k
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Answer: Answer: Strand specific quantification with strand-splitted BAM files
2.8 years ago by benformatics 3.9k
4
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1
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1.9k
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Answer: Answer: Error when using UpSetR package
2.8 years ago by benformatics 3.9k
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0
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941
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Answer: Answer: Gene prediction methods
2.8 years ago by benformatics 3.9k
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2
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1.4k
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Answer: Answer: cellranger count aggregated to transcripts
2.8 years ago by benformatics 3.9k
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1.2k
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Answer: Answer: Issue with bed to bam conversion - sequence in bam headers
2.8 years ago by benformatics 3.9k
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2
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1.2k
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Answer: Answer: Strand specific library
2.8 years ago by benformatics 3.9k
2
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2
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757
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Answer: Answer: Exons Distribution from single cell data.
2.8 years ago by benformatics 3.9k
0
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0
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992
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Answer: Answer: Filter unique values from a data frame in R
2.9 years ago by benformatics 3.9k
2
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2
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1.6k
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Answer: Answer: RNA variant calling, aligned with HiSat2
2.9 years ago by benformatics 3.9k
1
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0
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1.2k
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Answer: Answer: Using BiomaRt returns to get entrez gene ids returns an error. Why is this happe
2.9 years ago by benformatics 3.9k
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1
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2.3k
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Answer: Answer: The exon numbers of each transcript,
2.9 years ago by benformatics 3.9k
2
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1
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1.8k
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Answer: Answer: Flye assembly, increased coverage results in decreased N50
2.9 years ago by benformatics 3.9k
2
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1
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1.2k
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Answer: Answer: How to paralle trim_galore for single sample?
2.9 years ago by benformatics 3.9k
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1.2k
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Answer: Answer: How to use DELLY on Galaxy
2.9 years ago by benformatics 3.9k
1
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1
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2.1k
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Answer: Answer: 10x genomics single cell RNA-Seq data submission to GEO
3.0 years ago by benformatics 3.9k
0
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0
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704
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Answer: Answer: Genomic Ranges of data from a chromosome
3.1 years ago by benformatics 3.9k
1
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0
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1.7k
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Answer: Answer: Scatterplot ggplot: too many overlapping point make an area magnified/ increase
3.1 years ago by benformatics 3.9k
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