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Comment: Comment: 44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped
4 days ago by Thind amarinder ▴ 340
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447
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Answer: Answer: Is it possible to use RSEM with BAM files from STAR alignment?
5 weeks ago by Thind amarinder ▴ 340
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628
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Comment: Comment: How to use conumee segment mean for gistic input
5 months ago by Thind amarinder ▴ 340
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1.5k
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Comment: Comment: Generating Positional List from VCF
7 months ago by Thind amarinder ▴ 340
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2
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628
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How to use conumee segment mean for gistic input
genomics gistic NGS methylation conumee
5 months ago by Thind amarinder ▴ 340
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1
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15k
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Comment: Comment: TCGA/Broad Institute CNV Files Segment Mean
20 months ago by Thind amarinder ▴ 340
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1.5k
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Answer: Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 21 months ago by 161k • written 21 months ago by ▴ 340
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15k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
21 months ago by Thind amarinder ▴ 340
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1
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15k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
21 months ago by Thind amarinder ▴ 340
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1
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10k
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Answer: Answer: Detecting copy number alterations based on RNA-seq data
22 months ago by Thind amarinder ▴ 340
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33k
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Comment: Comment: Sjdboverhang Option In Star
23 months ago by Thind amarinder ▴ 340
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33k
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Comment: Comment: Sjdboverhang Option In Star
23 months ago by Thind amarinder ▴ 340
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1
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33k
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Comment: Comment: Sjdboverhang Option In Star
23 months ago by Thind amarinder ▴ 340
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6.8k
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Answer: Answer: How to make a summary plot like below?
24 months ago by Thind amarinder ▴ 340
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1.5k
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Comment: Comment: computing chromothripsis on cancer genomes
24 months ago by Thind amarinder ▴ 340
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1
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1.2k
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Comment: Comment: RNA sequencing
2.0 years ago by Thind amarinder ▴ 340
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1
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5.5k
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Comment: Comment: which matrix should be used to draw heatmap in RNAseq?
2.2 years ago by Thind amarinder ▴ 340
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722
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Answer: Answer: Ploidy in WGS samples
2.2 years ago by Thind amarinder ▴ 340
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1.9k
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Answer: Answer: RNA-Seq analysis and biological replicates.
2.3 years ago by Thind amarinder ▴ 340
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604
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Comment: Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
2.3 years ago by Thind amarinder ▴ 340
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720
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Comment: Comment: solution for lncRNA naming issues for annotation and Functional analysis
2.3 years ago by Thind amarinder ▴ 340
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2
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720
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solution for lncRNA naming issues for annotation and Functional analysis
annotations lncRNA functional
2.3 years ago by Thind amarinder ▴ 340
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671
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Comment: Comment: RNA variant calling pipeline
2.3 years ago by Thind amarinder ▴ 340
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1
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674
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Answer: Answer: How to quantify the viral sequencing reads from RNA-seq data?
2.3 years ago by Thind amarinder ▴ 340
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1.1k
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Comment: Comment: extract copy number variation from read count file of WES
2.5 years ago by Thind amarinder ▴ 340
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1
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1.1k
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Comment: Comment: extract copy number variation from read count file of WES
2.5 years ago by Thind amarinder ▴ 340
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4.0k
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Comment: Comment: Which Driver-Gene Detecting Software Supports hg38?
2.6 years ago by Thind amarinder ▴ 340
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641
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Comment: Comment: Dataset of different timepoints of a cancers progression in the same patient?
2.7 years ago by Thind amarinder ▴ 340
1
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0
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721
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Blog: Revisiting bulk RNA-Seq applications
RNASeq variants TWAS Neoantigens
updated 11 months ago by 43k • written 2.8 years ago by ▴ 340
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1
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1.9k
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Comment: Comment: Liftover vs Ensembl Crossmap
3.1 years ago by Thind amarinder ▴ 340
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3
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1.9k
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Liftover vs Ensembl Crossmap
crossmap liftover converter assembly ensembl
3.0 years ago by Thind amarinder ▴ 340
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4.2k
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Comment: Comment: Are there any tutorials available for Nanostring data differential expression an
3.1 years ago by Thind amarinder ▴ 340
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1
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4.2k
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Answer: Answer: Are there any tutorials available for Nanostring data differential expression an
3.1 years ago by Thind amarinder ▴ 340
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0
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656
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Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
3.2 years ago by Thind amarinder ▴ 340
3
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9.2k
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Answer: Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 3.0 years ago by 43k • written 3.4 years ago by ▴ 340
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4.7k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
3.5 years ago by Thind amarinder ▴ 340
0
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794
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interaction prediction of circRNA and miRNA and co -expression network
miRNA circRNA coexpression RNA-Seq NGS
3.5 years ago by Thind amarinder ▴ 340
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1
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4.7k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
3.5 years ago by Thind amarinder ▴ 340
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0
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13k
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Comment: C: Bioinformatics Journal with no publishing fees?
3.5 years ago by Thind amarinder ▴ 340
1
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1.8k
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Answer: A: Potential Bacteria Contamination - RNA-Seq
3.5 years ago by Thind amarinder ▴ 340
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13k
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Comment: C: Gene list from bed file
3.6 years ago by Thind amarinder ▴ 340
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0
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13k
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Comment: C: To Get All Genes Within A Genomic Region
3.6 years ago by Thind amarinder ▴ 340
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4
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4.6k
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Tutorial: RNASeq tutorial for gene differential expression analysis
Transcriptomics bioconductor RNA-Seq R
updated 14 months ago by 43k • written 3.8 years ago by ▴ 340
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0
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4.6k
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Comment: C: RNASeq tutorial for gene differential expression analysis
3.6 years ago by Thind amarinder ▴ 340
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0
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913
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Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq whole genome sequencing SNV next-gen CNA
3.6 years ago by Thind amarinder ▴ 340
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0
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2.2k
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Comment: Comment: How to compare gene TPM values of two different conditions obtained from differe
2.3 years ago by Thind amarinder ▴ 340
2
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2
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2.2k
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How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq TPM normalization
2.3 years ago by Thind amarinder ▴ 340
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2
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4.6k
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Comment: C: RNASeq tutorial for gene differential expression analysis
3.7 years ago by Thind amarinder ▴ 340
0
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0
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53k
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Comment: C: PCA plot from read count matrix from RNA-Seq
3.7 years ago by Thind amarinder ▴ 340
0
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0
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3.8k
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Answer: A: PHYLIP to MEGA converter
3.8 years ago by Thind amarinder ▴ 340
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