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Answer: Answer: Biomart issue, why so few 3'utrs?
5 days ago by i.sudbery 19k
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416
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Answer: Answer: Understanding STAR output (Aligned.out.sam file)
12 days ago by i.sudbery 19k
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433
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Answer: Answer: How goes gene length effect the number of reads mapped
17 days ago by i.sudbery 19k
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453
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Answer: Answer: What purposes can TPM values be used for?
17 days ago by i.sudbery 19k
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171
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
20 days ago by i.sudbery 19k
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274
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Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
4 weeks ago by i.sudbery 19k
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1.3k
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Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
5 weeks ago by i.sudbery 19k
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478
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Answer: Answer: chromHMM annotations
6 weeks ago by i.sudbery 19k
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504
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Answer: Answer: UMI_extract for paired end reads of micro_RNA
9 weeks ago by i.sudbery 19k
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219
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Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
9 weeks ago by i.sudbery 19k
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592
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Answer: Answer: conda install -Killed
9 weeks ago by i.sudbery 19k
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390
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
9 weeks ago by i.sudbery 19k
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740
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Answer: Answer: Difference between GLM and Wilcoxon rank sum test
10 weeks ago by i.sudbery 19k
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288
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Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
11 weeks ago by i.sudbery 19k
2
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1
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839
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Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
12 weeks ago by i.sudbery 19k
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402
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Answer: Answer: perplexed regarding the process of gene expression normalision
12 weeks ago by i.sudbery 19k
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311
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Answer: Answer: Heteroscedasticity in RNA-seq data
3 months ago by i.sudbery 19k
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668
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Answer: Answer: question on how differential expression is affected if there is differential abu
3 months ago by i.sudbery 19k
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2
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443
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Answer: Answer: Enrichment Analysis with Fisher's exact test
3 months ago by i.sudbery 19k
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308
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Answer: Answer: Calling variants with UMI-collapsed duplex consensus reads
3 months ago by i.sudbery 19k
2
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1
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449
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Answer: Answer: UMI workflow resulting in bams with empty reads
3 months ago by i.sudbery 19k
3
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1
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419
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Answer: Answer: How to fix DESeq2 Error in checkFullRank(modelMatrix)
3 months ago by i.sudbery 19k
7
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678
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Answer: Answer: Why employ normalization methods, and how can they be utilized in DEG analysis?
3 months ago by i.sudbery 19k
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269
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Answer: Answer: Is it possible to identify the strand of an RNA using UMI?
3 months ago by i.sudbery 19k
2
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0
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883
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Answer: Answer: Tower Server configuration for NGS data analysis
3 months ago by i.sudbery 19k
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271
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Answer: Answer: Differential Abundance between samples
3 months ago by i.sudbery 19k
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1.7k
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Answer: Answer: GOSeq gene ontology enrichment analysis in rice
3 months ago by i.sudbery 19k
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225
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Answer: Answer: Batch correction for eQTL analysis
3 months ago by i.sudbery 19k
6
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1.1k
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Answer: Answer: How to overcome the imposter syndrome in bioinformatics?
3 months ago by i.sudbery 19k
2
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1
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1.6k
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Answer: Answer: How to speed Salmon index up
4 months ago by i.sudbery 19k
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0
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718
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Answer: Answer: UMI-tools no tsv files at deduplication
4 months ago by i.sudbery 19k
6
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1
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2.2k
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Answer: Answer: Determining computer time required
4 months ago by i.sudbery 19k
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1
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940
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Answer: Answer: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
updated 4 months ago by 43k • written 4 months ago by 19k
4
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570
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Answer: Answer: Differential expression analysis in a short gene list
4 months ago by i.sudbery 19k
2
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1
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579
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Answer: Answer: Question about identification of DEGs in paired sample using edgeR
4 months ago by i.sudbery 19k
1
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0
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608
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Answer: Answer: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
updated 4 months ago by 43k • written 4 months ago by 19k
3
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1
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909
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Answer: Answer: installing DESeq2 on Windows
4 months ago by i.sudbery 19k
1
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1
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1.9k
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Answer: Answer: What apps can read large FASTQ files on Windows?
5 months ago by i.sudbery 19k
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1
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576
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Answer: Answer: Best method for batch correction of three datasets
updated 5 months ago by 82k • written 5 months ago by 19k
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379
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Answer: Answer: multiple condition and time course in RNA-seq
5 months ago by i.sudbery 19k
2
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0
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649
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Answer: Answer: Does DESeq2 correct for library size when importing the counts with DESeqDataSet
6 months ago by i.sudbery 19k
3
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1
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1.3k
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Answer: Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
6 months ago by i.sudbery 19k
0
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4
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1.4k
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Answer: Answer: Dealing with transcriptome sequences that are smaller than their respective gene
8 months ago by i.sudbery 19k
3
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1
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1.7k
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Answer: Answer: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
8 months ago by i.sudbery 19k
1
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1
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798
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Answer: Answer: From where can I obtain vcf files of healthy exomes
8 months ago by i.sudbery 19k
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0
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by i.sudbery 19k
4
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1
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1.2k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
8 months ago by i.sudbery 19k
0
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1
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968
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Answer: Answer: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
2
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2
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963
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Answer: Answer: RSEM uses different gene lengths for each sample.
9 months ago by i.sudbery 19k
0
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1
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742
views
Answer: Answer: Quantification of allele-specific gene expression in RNA-seq
9 months ago by i.sudbery 19k
566 results • Page 1 of 12
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