Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
185
views
Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
1 day ago by i.sudbery 19k
1
vote
1
reply
185
views
Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
1 day ago by i.sudbery 19k
0
votes
1
reply
185
views
Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
1 day ago by i.sudbery 19k
1
vote
1
reply
318
views
Answer: Answer: Understanding STAR output (Aligned.out.sam file)
1 day ago by i.sudbery 19k
0
votes
1
reply
308
views
Comment: Comment: How does gene length effect the number of reads mapped
5 days ago by i.sudbery 19k
0
votes
1
reply
308
views
Comment: Comment: How does gene length effect the number of reads mapped
5 days ago by i.sudbery 19k
0
votes
1
reply
308
views
Answer: Answer: How goes gene length effect the number of reads mapped
6 days ago by i.sudbery 19k
0
votes
0
replies
364
views
Answer: Answer: What purposes can TPM values be used for?
6 days ago by i.sudbery 19k
0
votes
0
replies
193
views
Comment: Comment: Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
7 days ago by i.sudbery 19k
1
vote
0
replies
2.0k
views
Comment: Comment: NGS forensics: how to know if data is fabricated
8 days ago by i.sudbery 19k
0
votes
0
replies
562
views
Comment: Comment: Low mapping rate with Salmon
8 days ago by i.sudbery 19k
0
votes
1
reply
2.0k
views
Comment: Comment: NGS forensics: how to know if data is fabricated
9 days ago by i.sudbery 19k
0
votes
0
replies
314
views
Comment: Comment: ChIP-seq datasets: input samples omitted?
9 days ago by i.sudbery 19k
0
votes
0
replies
150
views
Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
9 days ago by i.sudbery 19k
1
vote
1
reply
2.0k
views
Comment: Comment: NGS forensics: how to know if data is fabricated
9 days ago by i.sudbery 19k
1
vote
0
replies
2.0k
views
Comment: Comment: NGS forensics: how to know if data is fabricated
9 days ago by i.sudbery 19k
0
votes
1
reply
562
views
Comment: Comment: Low mapping rate with Salmon
12 days ago by i.sudbery 19k
1
vote
0
replies
356
views
Comment: Comment: what is the purpose of indexing the reference genome (Kallisto)
12 days ago by i.sudbery 19k
0
votes
0
replies
388
views
Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
15 days ago by i.sudbery 19k
0
votes
1
reply
562
views
Comment: Comment: Low mapping rate with Salmon
16 days ago by i.sudbery 19k
1
vote
0
replies
507
views
Comment: Comment: Marking duplicates using UMIs
16 days ago by i.sudbery 19k
1
vote
1
reply
507
views
Comment: Comment: Marking duplicates using UMIs
17 days ago by i.sudbery 19k
2
votes
0
replies
260
views
Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
23 days ago by i.sudbery 19k
0
votes
1
reply
1.2k
views
Comment: Comment: How I know if it is a batch effect or are real differences between my controls a
4 weeks ago by i.sudbery 19k
6
votes
1
reply
1.2k
views
Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
4 weeks ago by i.sudbery 19k
1
vote
1
reply
449
views
Comment: Comment: chromHMM annotations
4 weeks ago by i.sudbery 19k
1
vote
1
reply
449
views
Answer: Answer: chromHMM annotations
4 weeks ago by i.sudbery 19k
0
votes
1
reply
440
views
Comment: Comment: DESeq: too low p-value for RNAseq
4 weeks ago by i.sudbery 19k
0
votes
0
replies
395
views
Comment: Comment: Mathematical/Statistical models to predict mRNA half-life
7 weeks ago by i.sudbery 19k
0
votes
1
reply
462
views
Answer: Answer: UMI_extract for paired end reads of micro_RNA
8 weeks ago by i.sudbery 19k
1
vote
0
replies
195
views
Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
8 weeks ago by i.sudbery 19k
0
votes
1
reply
524
views
Answer: Answer: conda install -Killed
8 weeks ago by i.sudbery 19k
1
vote
0
replies
374
views
Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
8 weeks ago by i.sudbery 19k
0
votes
0
replies
215
views
Comment: Comment: RNA-seq DE with AAV injection
8 weeks ago by i.sudbery 19k
1
vote
1
reply
670
views
Comment: Comment: Difference between GLM and Wilcoxon rank sum test
9 weeks ago by i.sudbery 19k
3
votes
1
reply
670
views
Answer: Answer: Difference between GLM and Wilcoxon rank sum test
9 weeks ago by i.sudbery 19k
0
votes
0
replies
565
views
Comment: Comment: minimap2 gets killed, but it doesn't explain why
9 weeks ago by i.sudbery 19k
2
votes
1
reply
281
views
Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
9 weeks ago by i.sudbery 19k
0
votes
0
replies
596
views
Comment: Comment: Multiple unique reads sharing same UMI barcode
10 weeks ago by i.sudbery 19k
2
votes
1
reply
814
views
Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
10 weeks ago by i.sudbery 19k
0
votes
1
reply
596
views
Comment: Comment: Multiple unique reads sharing same UMI barcode
10 weeks ago by i.sudbery 19k
0
votes
1
reply
596
views
Comment: Comment: Multiple unique reads sharing same UMI barcode
10 weeks ago by i.sudbery 19k
1
vote
1
reply
391
views
Answer: Answer: perplexed regarding the process of gene expression normalision
10 weeks ago by i.sudbery 19k
1
vote
0
replies
296
views
Answer: Answer: Heteroscedasticity in RNA-seq data
11 weeks ago by i.sudbery 19k
2
votes
0
replies
655
views
Answer: Answer: question on how differential expression is affected if there is differential abu
11 weeks ago by i.sudbery 19k
1
vote
0
replies
417
views
Comment: Comment: Enrichment Analysis with Fisher's exact test
12 weeks ago by i.sudbery 19k
2
votes
2
replies
417
views
Answer: Answer: Enrichment Analysis with Fisher's exact test
12 weeks ago by i.sudbery 19k
0
votes
0
replies
293
views
Answer: Answer: Calling variants with UMI-collapsed duplex consensus reads
12 weeks ago by i.sudbery 19k
2
votes
1
reply
440
views
Answer: Answer: UMI workflow resulting in bams with empty reads
12 weeks ago by i.sudbery 19k
0
votes
0
replies
412
views
Comment: Comment: How to fix DESeq2 Error in checkFullRank(modelMatrix)
3 months ago by i.sudbery 19k
1,501 results • Page 1 of 31
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6