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Comment: Comment: transcriptomic data for molecular subtyping
9 weeks ago by mark.ziemann ★ 1.9k
2
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395
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Answer: Answer: How to find GO function from GEO2R results
9 weeks ago by mark.ziemann ★ 1.9k
1
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1
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338
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Answer: Answer: transcriptomic data for molecular subtyping
9 weeks ago by mark.ziemann ★ 1.9k
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0
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216
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Answer: Answer: Aneuploidy analysis from WGS
9 weeks ago by mark.ziemann ★ 1.9k
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1
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453
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Comment: Comment: Simulation of gene level methylation data
9 weeks ago by mark.ziemann ★ 1.9k
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2
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641
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Answer: Answer: Geo2R troubleshooting
11 weeks ago by mark.ziemann ★ 1.9k
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1
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453
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Answer: Answer: Simulation of gene level methylation data
11 weeks ago by mark.ziemann ★ 1.9k
1
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1
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539
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Answer: Answer: Methods to analyze EM-seq data
12 weeks ago by mark.ziemann ★ 1.9k
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473
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Comment: Comment: Error in mitch reports in R
3 months ago by mark.ziemann ★ 1.9k
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433
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Answer: Answer: mitch analysis report priority by standard deviation
3 months ago by mark.ziemann ★ 1.9k
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253
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Answer: Answer: How to get differntial Protein expression from protein abundance?
3 months ago by mark.ziemann ★ 1.9k
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495
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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
8 months ago by mark.ziemann ★ 1.9k
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1
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603
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
8 months ago by mark.ziemann ★ 1.9k
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0
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701
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Answer: Answer: Biological replicates in RNA-seq
11 months ago by mark.ziemann ★ 1.9k
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1
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472
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Answer: Answer: clusterprofile enrichment analysis
11 months ago by mark.ziemann ★ 1.9k
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1.3k
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
15 months ago by mark.ziemann ★ 1.9k
3
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1
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875
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Answer: Answer: What exactly are unmappable regions?
15 months ago by mark.ziemann ★ 1.9k
2
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1
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1.6k
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Answer: Answer: gseGO by fold-change returns errors
15 months ago by mark.ziemann ★ 1.9k
1
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1
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570
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
16 months ago by mark.ziemann ★ 1.9k
0
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0
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732
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
16 months ago by mark.ziemann ★ 1.9k
4
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1.3k
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Answer: Answer: How to create a new gene signature from RNAseq data
21 months ago by mark.ziemann ★ 1.9k
0
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0
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566
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Comment: Comment: Finding the similarity between two arrays of sequences
21 months ago by mark.ziemann ★ 1.9k
1
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1
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618
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Answer: Answer: Horizontal Gene Tranfer/Recombination
21 months ago by mark.ziemann ★ 1.9k
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1.4k
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Comment: Comment: feature counts invalid parameter
21 months ago by mark.ziemann ★ 1.9k
3
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1
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607
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
21 months ago by mark.ziemann ★ 1.9k
2
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1
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832
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Comment: Comment: GSEA - Software or R
21 months ago by mark.ziemann ★ 1.9k
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1
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680
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Comment: Comment: blastn command line
21 months ago by mark.ziemann ★ 1.9k
1
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1
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728
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Answer: Answer: sequence error
21 months ago by mark.ziemann ★ 1.9k
2
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0
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1.2k
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Answer: Answer: GC content calculation in percentage
21 months ago by mark.ziemann ★ 1.9k
0
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0
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559
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
21 months ago by mark.ziemann ★ 1.9k
0
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0
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1.5k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by mark.ziemann ★ 1.9k
3
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2
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1.5k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by mark.ziemann ★ 1.9k
1
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0
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725
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Comment: Comment: DNA sequencing from cord blood stem cells
21 months ago by mark.ziemann ★ 1.9k
1
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0
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513
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
21 months ago by mark.ziemann ★ 1.9k
2
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1
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725
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Answer: Answer: DNA sequencing from cord blood stem cells
21 months ago by mark.ziemann ★ 1.9k
2
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0
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587
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Answer: Answer: Accessing particular gene set with msigdbr on R
21 months ago by mark.ziemann ★ 1.9k
4
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1
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713
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Answer: Answer: Repeats/Transposons finding
21 months ago by mark.ziemann ★ 1.9k
0
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1
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576
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Answer: Answer: How to get gene expression data from list of gene
21 months ago by mark.ziemann ★ 1.9k
0
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0
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888
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Comment: Comment: 3d plot in matplotlib of my own data
21 months ago by mark.ziemann ★ 1.9k
2
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0
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644
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
21 months ago by mark.ziemann ★ 1.9k
1
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0
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388
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Answer: Answer: Bacterial small-rna analysis
21 months ago by mark.ziemann ★ 1.9k
0
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0
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2.7k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
21 months ago by mark.ziemann ★ 1.9k
0
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0
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1.4k
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Comment: Comment: RepeatMasker error
21 months ago by mark.ziemann ★ 1.9k
0
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1
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2.7k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
21 months ago by mark.ziemann ★ 1.9k
2
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0
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565
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
21 months ago by mark.ziemann ★ 1.9k
1
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0
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477
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Answer: Answer: How to identify the genome build a dataset was aligned too?
21 months ago by mark.ziemann ★ 1.9k
0
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0
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860
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Comment: Comment: NGS reads calculation
21 months ago by mark.ziemann ★ 1.9k
1
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1
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1.4k
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Comment: Comment: RepeatMasker error
21 months ago by mark.ziemann ★ 1.9k
15
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11
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4.7k
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9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 months ago by 43k • written 2.1 years ago by ★ 1.9k
1
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0
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1.4k
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Comment: Comment: DMR calling for EWAS meta-analysis
2.4 years ago by mark.ziemann ★ 1.9k
210 results • Page 1 of 5
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