Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
232
views
What does ANOVA test over CoxPH model mean?
SurvivalAnalysis CoxPH ANOVA Survival
3 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
vote
0
replies
774
views
Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
774
views
Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
774
views
Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
0
replies
5.8k
views
Comment: Comment: How to create interval list from reference fasta or dict file?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
2
votes
6
replies
774
views
GetPileupSummaries intervals-list with Targeted Sequencing?
GetPileUpSummaries GATK Variant-Calling
updated 5 months ago by 43k • written 5 months ago by ▴ 100
0
votes
0
replies
286
views
Apply BSQR for Targeted Sequencing
GenomicPipelines GATK variant-calling
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
4
votes
2
replies
682
views
Visualization package for Maf Files using Python
Python maftools Visualization MAF
updated 7 months ago by ★ 1.5k • written 7 months ago by ▴ 100
0
votes
0
replies
334
views
Convert from limma voom normalized matrix each gene to high/low
limma-voom RNA-SEQ
updated 7 months ago by 43k • written 7 months ago by ▴ 100
2
votes
1
reply
631
views
Consensus Cluster takes normalized gene counts or raw gene counts?
R Gene-Expression ConsensusCluster DGE
updated 8 months ago by ★ 2.4k • written 8 months ago by ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
6
votes
9
replies
1.3k
views
Enricher - Hyper Geometric Test Details
Enricher ClusterProfiler DGE ORA
updated 8 months ago by 82k • written 9 months ago by ▴ 100
1
vote
0
replies
579
views
Answer: Answer: Over Representation Analysis over one specific pathway
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
0
replies
579
views
Comment: Comment: Over Representation Analysis over one specific pathway
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
3
votes
3
replies
579
views
Over Representation Analysis over one specific pathway
GSEA DGE ORA
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
5
votes
1
reply
644
views
Enricher with Gene Symbols
DGE ClusterProfiler Enrich ORA
updated 9 months ago by ★ 2.4k • written 9 months ago by ▴ 100
1
vote
0
replies
288
views
How to define TMB-High/TMB-Low and Gene Expression High/Low?
Voom Limma TMB RNASeq GeneExpression
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
0
replies
595
views
Comment: Comment: Gene set enrichment analysis / Kegg analysis
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
0
replies
744
views
Comment: Comment: What are the reasons to find so few Differentially expressed genes (DEGs)?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
vote
1
reply
767
views
Comment: Comment: LogFc vs t_statistic to estimate over/under expressed genes?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
8
votes
4
replies
767
views
LogFc vs t_statistic to estimate over/under expressed genes?
T-Test Limma DGE Voom
updated 9 months ago by 82k • written 9 months ago by ▴ 100
2
votes
1
reply
593
views
Maf File Bar Code
GATK Maf vcf
updated 9 months ago by ★ 1.2k • written 9 months ago by ▴ 100
11
votes
3
replies
549
views
Send BAM files from server to cluster
BAM
updated 9 months ago by 82k • written 9 months ago by ▴ 100
4
votes
5
replies
703
views
Keplen Meyer Curve Dropping to zero
R SurvivalAnalysis SurvFit Surv
updated 9 months ago by ★ 1.4k • written 9 months ago by ▴ 100
0
votes
0
replies
703
views
Comment: Comment: Keplen Meyer Curve Dropping to zero
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: GATK GetPileupSummaries Java heap space
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
vote
1
reply
1.9k
views
Comment: Comment: Typical Volcano Plot for DGE
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
5
votes
8
replies
1.3k
views
6 follow
Convert files made for b37 into hg19 human reference?
GATK Variant-Calling Mutect2
updated 9 months ago by ★ 3.9k • written 9 months ago by ▴ 100
1
vote
0
replies
1.9k
views
Answer: Answer: Typical Volcano Plot for DGE
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: GATK GetPileupSummaries Java heap space
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
7
votes
5
replies
1.1k
views
GATK GetPileupSummaries Java heap space
GATK Variant-Calling GetPileupSummaries
updated 5 months ago by 43k • written 9 months ago by ▴ 100
0
votes
0
replies
539
views
GATK GetPileUpSummariesUsage
GATK Variant-Calling Mutect2 GetPileupSummaries
updated 9 months ago by 43k • written 9 months ago by ▴ 100
0
votes
1
reply
5.8k
views
Comment: Comment: GATK BaseRecalibrator known-sites vcf file
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
5.8k
views
Comment: Comment: GATK BaseRecalibrator known-sites vcf file
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
0
replies
12k
views
Comment: Comment: problems in hg19 and b37 compatibility
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
0
replies
1.3k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
901
views
Does the gene universe for enrichGo need to be a list of gene names?
enrichGo RNA-Seq OverRepresentation ORA clusterProfiler
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 100
0
votes
0
replies
926
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
926
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
2
replies
926
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
vote
7
replies
926
views
GATK Mutect2 Input files reference and features have incompatible contigs: No overlapping contigs found.
hg19 Mutect2 GATK Variant-Calling
updated 7 weeks ago by 43k • written 9 months ago by ▴ 100
0
votes
0
replies
521
views
Comment: Comment: Should sorted bam files when processed have ordered chromossomes?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
521
views
Comment: Comment: Should sorted bam files when processed have ordered chromossomes?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
5
votes
5
replies
521
views
Should sorted bam files when processed have ordered chromossomes?
BAM GATK MarkDuplicates
updated 9 months ago by 43k • written 9 months ago by ▴ 100
0
votes
0
replies
677
views
Comment: Comment: Filtering unmapped reads from BAM files
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
6
votes
3
replies
577
views
Optimal Over Representation Analysis DE genes foldFC threshold?
ClusterProfiler ORA EnrichGo DGE
updated 9 months ago by 4.2k • written 9 months ago by ▴ 100
57 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6