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Answer: Answer: Mapping vs Alignment mode in Salmon
12 weeks ago by Rob 6.5k
5
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740
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Answer: Answer: is oxford nanopore technology data paired or single end sequencing?
12 weeks ago by Rob 6.5k
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1
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507
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Answer: Answer: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
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1
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473
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Answer: Answer: salmon with long read
3 months ago by Rob 6.5k
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1.1k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
4 months ago by Rob 6.5k
4
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0
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625
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Answer: Answer: Fetch Fastq files directly for SRA data
7 months ago by Rob 6.5k
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0
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841
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Answer: Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
9 months ago by Rob 6.5k
5
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1
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1.8k
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Answer: Answer: Mapping vs Alignment
10 months ago by Rob 6.5k
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1
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768
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Answer: Answer: How does salmon uses polyester?
12 months ago by Rob 6.5k
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0
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827
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
13 months ago by Rob 6.5k
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2
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1.5k
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Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
13 months ago by Rob 6.5k
6
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2.3k
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Answer: Answer: long read + salmon? (transcript abundance)
updated 14 months ago by 82k • written 14 months ago by 6.5k
1
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901
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Answer: Answer: Salmon lib_format_counts.json - explanation
14 months ago by Rob 6.5k
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2
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1.0k
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Answer: Answer: Salmon TPM calculation constant
14 months ago by Rob 6.5k
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1
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1.1k
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Answer: Answer: CellRanger v. 2.0 and v. 7.0
17 months ago by Rob 6.5k
3
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1
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940
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Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
18 months ago by Rob 6.5k
3
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0
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550
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Answer: Answer: Stranded or unstranded? That is the question
19 months ago by Rob 6.5k
2
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1
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887
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Answer: Answer: Salmon libtype guessing and mapping bias
19 months ago by Rob 6.5k
2
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2.6k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
19 months ago by Rob 6.5k
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1
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658
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Answer: Answer: Splice aware or not for RNA sequence data
20 months ago by Rob 6.5k
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0
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1.1k
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Answer: Answer: strand specificity
21 months ago by Rob 6.5k
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1
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1.7k
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Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
21 months ago by Rob 6.5k
3
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1
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1.6k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
23 months ago by Rob 6.5k
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1
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880
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Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
23 months ago by Rob 6.5k
4
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1
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1.8k
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Answer: Answer: How does Salmon bootstrapping work?
2.0 years ago by Rob 6.5k
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0
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667
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Answer: Answer: Why is an effective length of a trasncript better than normal length?
2.2 years ago by Rob 6.5k
3
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0
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2.6k
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Answer: Answer: Fastest way to parse through a fasta file in python
2.3 years ago by Rob 6.5k
4
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2
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1.1k
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
2.4 years ago by Rob 6.5k
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1
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1.8k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
2.5 years ago by Rob 6.5k
4
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1
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6.0k
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Answer: Answer: UMAP vs "rigorous" t-SNE
2.7 years ago by Rob 6.5k
4
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1
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2.4k
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Answer: Answer: k-mer counters - presence/absence matrix
2.7 years ago by Rob 6.5k
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2
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2.1k
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Answer: Answer: STARsolo --EmptyDrops_CR parameters
2.9 years ago by Rob 6.5k
2
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1
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2.7k
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Answer: Answer: Star alingment, Salmon quantification
3.0 years ago by Rob 6.5k
6
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1
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2.4k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
3.0 years ago by Rob 6.5k
3
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0
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1.8k
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Answer: C: Quantify Isoforms in RNA-Seq data
3.4 years ago by Rob 6.5k
10
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1
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8.1k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.5 years ago by Rob 6.5k
11
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0
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8.1k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.5 years ago by Rob 6.5k
2
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1
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6.3k
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Answer: A: update salmon with conda
3.5 years ago by Rob 6.5k
4
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1
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2.6k
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Answer: A: Gibbs sampling/bootstrap replicates in Salmon
3.6 years ago by Rob 6.5k
2
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1
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3.4k
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Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
3.6 years ago by Rob 6.5k
2
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1
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1.6k
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Answer: A: rsem-simulate-reads: simulating different data
3.7 years ago by Rob 6.5k
14
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1
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8.9k
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Answer: A: How does salmon deal with decoy?
3.7 years ago by Rob 6.5k
3
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1
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1.6k
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Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
3.8 years ago by Rob 6.5k
2
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0
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971
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Answer: A: Trimmomatic and Salmon error
3.8 years ago by Rob 6.5k
3
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1
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2.1k
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Answer: A: Transcript level counts from full length scRNA data
3.9 years ago by Rob 6.5k
2
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1
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4.2k
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Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.9 years ago by Rob 6.5k
3
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0
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3.5k
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Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
3.9 years ago by Rob 6.5k
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1
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2.2k
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Answer: A: hisat2 salmon alignment error
4.1 years ago by Rob 6.5k
5
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3
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1.7k
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Answer: C: can salmon distinguish similar transcript?
4.2 years ago by Rob 6.5k
5
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1
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3.8k
views
Answer: A: warning when creating salmon index from GENCODE transcriptome
4.2 years ago by Rob 6.5k
127 results • Page 1 of 3
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