Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
1
reply
413
views
Comment: Comment: A c library for reading and writing sequences in fasta and fastq format.
8 weeks ago by Rob 6.5k
1
vote
1
reply
476
views
Comment: Comment: Mapping vs Alignment mode in Salmon
12 weeks ago by Rob 6.5k
0
votes
1
reply
476
views
Answer: Answer: Mapping vs Alignment mode in Salmon
12 weeks ago by Rob 6.5k
5
votes
0
replies
741
views
Answer: Answer: is oxford nanopore technology data paired or single end sequencing?
12 weeks ago by Rob 6.5k
0
votes
0
replies
507
views
Comment: Comment: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
1
vote
1
reply
507
views
Comment: Comment: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
0
votes
1
reply
507
views
Answer: Answer: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
1
vote
0
replies
473
views
Comment: Comment: salmon with long reads
3 months ago by Rob 6.5k
0
votes
1
reply
1.4k
views
Comment: Comment: How to speed Salmon index up
3 months ago by Rob 6.5k
1
vote
1
reply
1.4k
views
Comment: Comment: How to speed Salmon index up
3 months ago by Rob 6.5k
1
vote
1
reply
473
views
Answer: Answer: salmon with long read
3 months ago by Rob 6.5k
5
votes
0
replies
1.1k
views
Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
4 months ago by Rob 6.5k
4
votes
0
replies
625
views
Answer: Answer: Fetch Fastq files directly for SRA data
7 months ago by Rob 6.5k
2
votes
0
replies
3.5k
views
Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
7 months ago by Rob 6.5k
0
votes
1
reply
914
views
Comment: Comment: Problem creating salmon index
9 months ago by Rob 6.5k
0
votes
0
replies
841
views
Answer: Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
9 months ago by Rob 6.5k
1
vote
1
reply
1.8k
views
Comment: Comment: Mapping vs Alignment
9 months ago by Rob 6.5k
5
votes
1
reply
1.8k
views
Answer: Answer: Mapping vs Alignment
10 months ago by Rob 6.5k
1
vote
2
replies
1.8k
views
Comment: Comment: How to discard alignments from SAM/BAM file that have mismatches
10 months ago by Rob 6.5k
1
vote
1
reply
768
views
Answer: Answer: How does salmon uses polyester?
12 months ago by Rob 6.5k
0
votes
0
replies
2.7k
views
Comment: Comment: g++: error：unrecognized command line option ‘-std=c++2a’
12 months ago by Rob 6.5k
2
votes
0
replies
2.2k
views
Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by Rob 6.5k
1
vote
0
replies
827
views
Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
13 months ago by Rob 6.5k
5
votes
2
replies
1.5k
views
Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
13 months ago by Rob 6.5k
2
votes
1
reply
1.4k
views
Comment: Comment: salmon output interpretation
14 months ago by Rob 6.5k
2
votes
0
replies
2.3k
views
Comment: Comment: long read + salmon? (transcript abundance)
14 months ago by Rob 6.5k
6
votes
1
reply
2.3k
views
Answer: Answer: long read + salmon? (transcript abundance)
updated 14 months ago by 82k • written 14 months ago by 6.5k
1
vote
1
reply
901
views
Answer: Answer: Salmon lib_format_counts.json - explanation
14 months ago by Rob 6.5k
1
vote
2
replies
1.0k
views
Answer: Answer: Salmon TPM calculation constant
14 months ago by Rob 6.5k
4
votes
0
replies
1.4k
views
Comment: Comment: KMP algorithm's time complexity
15 months ago by Rob 6.5k
0
votes
1
reply
8.1k
views
Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
16 months ago by Rob 6.5k
6
votes
0
replies
1.3k
views
Comment: Comment: How can I check if an RNA-Seq data is stranded (strand-specific) or not?
16 months ago by Rob 6.5k
1
vote
1
reply
2.2k
views
Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
17 months ago by Rob 6.5k
0
votes
1
reply
1.1k
views
Comment: Comment: CellRanger v. 2.0 and v. 7.0
17 months ago by Rob 6.5k
1
vote
1
reply
1.1k
views
Answer: Answer: CellRanger v. 2.0 and v. 7.0
17 months ago by Rob 6.5k
1
vote
0
replies
3.0k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
17 months ago by Rob 6.5k
1
vote
0
replies
940
views
Comment: Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
18 months ago by Rob 6.5k
3
votes
1
reply
940
views
Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
18 months ago by Rob 6.5k
3
votes
0
replies
550
views
Answer: Answer: Stranded or unstranded? That is the question
19 months ago by Rob 6.5k
2
votes
1
reply
887
views
Answer: Answer: Salmon libtype guessing and mapping bias
19 months ago by Rob 6.5k
2
votes
0
replies
2.6k
views
Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
19 months ago by Rob 6.5k
1
vote
1
reply
658
views
Answer: Answer: Splice aware or not for RNA sequence data
20 months ago by Rob 6.5k
1
vote
0
replies
3.0k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
21 months ago by Rob 6.5k
0
votes
1
reply
3.0k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
21 months ago by Rob 6.5k
2
votes
0
replies
1.1k
views
Comment: Comment: Does RSEM ignore STAR's splice-aware nature?
21 months ago by Rob 6.5k
1
vote
1
reply
1.9k
views
Comment: Comment: found no concordant and consistent mapping using Salmon
21 months ago by Rob 6.5k
0
votes
1
reply
1.9k
views
Comment: Comment: found no concordant and consistent mapping using Salmon
21 months ago by Rob 6.5k
2
votes
0
replies
1.1k
views
Answer: Answer: strand specificity
21 months ago by Rob 6.5k
1
vote
1
reply
3.2k
views
Comment: Comment: How to get TPM values from the STAR output?
21 months ago by Rob 6.5k
1
vote
1
reply
3.2k
views
Comment: Comment: How to get TPM values from the STAR output?
21 months ago by Rob 6.5k
343 results • Page 1 of 7
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6