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0
votes
1
reply
293
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Comment:
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
6 days ago by
Vijith
▴ 30
2
votes
3
replies
293
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 6 days ago by
dthorbur
★ 1.9k • written 6 days ago by
Vijith
▴ 30
0
votes
0
replies
98
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
7 days ago by
Vijith
▴ 30
0
votes
1
reply
596
views
Comment:
Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
6 weeks ago by
Vijith
▴ 30
2
votes
3
replies
596
views
Should I use Dfam or a custom repetitve elements library (from PlantRep) as a repeat database; using RepeatMasker in a Linux machine?
genome
sequence
repeatmasker
blast
updated 5 weeks ago by
b.contreras.moreira
▴ 180 • written 6 weeks ago by
Vijith
▴ 30
1
vote
1
reply
282
views
What could be a better K-mer for my WGS assembly task using ABySS, with my current hardware profile.
ABySS
genome
k-mer
assembly
updated 3 months ago by
shelkmike
★ 1.2k • written 3 months ago by
Vijith
▴ 30
0
votes
1
reply
752
views
Comment:
Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
4 months ago by
Vijith
▴ 30
3
votes
7
replies
752
views
"C++ compiler cannot create executables", while installing ABySS 2.0 assembler
assembly
illumina
abyss
btllib
paired-end
updated 3 months ago by
Raony Guimarães
★ 1.4k • written 4 months ago by
Vijith
▴ 30
0
votes
0
replies
752
views
Comment:
Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
4 months ago by
Vijith
▴ 30
0
votes
0
replies
752
views
Comment:
Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
4 months ago by
Vijith
▴ 30
0
votes
1
reply
1.1k
views
Comment:
Comment: Seeking help with a hybrid assembly. I have a batch of linked-reads from NovaSeq
7 months ago by
Vijith
▴ 30
3
votes
5
replies
1.1k
views
I have a pair of read files where each is a mixed pool of reads from the Linked-read technology and Illumina short-read technology. Any suggestion on…
NGS
clc-genomics
illumina
WGS
updated 7 months ago by
Ram
43k • written 7 months ago by
Vijith
▴ 30
0
votes
2
replies
907
views
Comment:
Comment: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
7 months ago by
Vijith
▴ 30
2
votes
3
replies
907
views
I have performed Trimmomatic run for adapter removal. QC report shows drop in the reads and presence of overrepresented sequences. Seeking help!
NGS
illumina
WGS
updated 7 months ago by
Ram
43k • written 7 months ago by
Vijith
▴ 30
0
votes
0
replies
480
views
Can someone help me to programmatically implement skewed normal distribution fitting on the given data points?
python
probability
normal
distribution
9 months ago by
Vijith
▴ 30
0
votes
0
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
0
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
0
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
2
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
2
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
2
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
23
votes
41
replies
4.4k
views
6 follow
I want to correct the erroneous barcode file, and the Python code that I've written, using Biopython, is very slow. How can I make this process fast…
NGS
biopython
illumina
WGS
updated 12 months ago by
Ram
43k • written 12 months ago by
Vijith
▴ 30
1
vote
0
replies
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
1
reply
4.4k
views
Comment:
Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by
Vijith
▴ 30
0
votes
0
replies
473
views
In a de novo genome assembly using Tell-Seq, why does Universal sequencing Tell-read pipelines generate "erroeneous barcode" files "?
NGS
Tell-seq
next
sequencing
generation
19 months ago by
Vijith
▴ 30
4
votes
4
replies
2.3k
views
What are R1, R2, R3, and I1 in a illumina sequencing data, and how can I get more information about them?
illumna
NGS
generation
sequencing
next
updated 19 months ago by
Prash
▴ 280 • written 19 months ago by
Vijith
▴ 30
0
votes
1
reply
2.3k
views
Comment:
Comment: What are R1, R2, R3, and I1 in a illumina sequencing data, and how can I get mor
19 months ago by
Vijith
▴ 30
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