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Comment: Comment: How to interpret DEXseq results in therms of significance
11 days ago by Sara ▴ 30
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100
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How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq DEXSeqDataSet SGSeq
18 days ago by Sara ▴ 30
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3
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687
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pheatmap
pheatmap heatmap differential-expression RNA-seq
updated 7 months ago by ★ 2.5k • written 7 months ago by ▴ 30
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687
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Comment: Comment: pheatmap
7 months ago by Sara ▴ 30
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1.0k
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Comment: Comment: How to get normalized counts corrected for variables in the design matrix of DES
9 months ago by Sara ▴ 30
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3
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1.0k
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How to get normalized counts corrected for variables in the design matrix of DESeq2 as an input for WGCNA
WGCNA vst DESeq2
9 months ago by Sara ▴ 30
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318
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minModuleSize WGCNA
WGCNA minModuleSize
9 months ago by Sara ▴ 30
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965
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Comment: Comment: Analize RNA-seq data using Hisat2
11 months ago by Sara ▴ 30
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2.3k
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Comment: Comment: samtools collate
11 months ago by Sara ▴ 30
6
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16
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2.3k
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samtools collate
samtools
11 months ago by Sara ▴ 30
1
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2
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2.3k
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Answer: Answer: samtools collate
11 months ago by Sara ▴ 30
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2
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2.3k
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Comment: Comment: samtools collate
11 months ago by Sara ▴ 30
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1
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2.3k
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Comment: Comment: samtools collate
11 months ago by Sara ▴ 30
0
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0
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2.3k
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Comment: Comment: samtools collate
11 months ago by Sara ▴ 30
0
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1
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2.3k
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Comment: Comment: samtools collate
11 months ago by Sara ▴ 30
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1.2k
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Comment: Comment: Losing a lot of significant genes after removing outliers. Having cell type comp
11 months ago by Sara ▴ 30
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5
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1.2k
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Losing a lot of significant genes after removing outliers. Having cell type composition as covariates
DESeq2 RNA-seq
11 months ago by Sara ▴ 30
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1
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1.2k
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Comment: Comment: Losing a lot of significant genes after removing outliers. Having cell type comp
11 months ago by Sara ▴ 30
8
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3
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931
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extreme high log2FoldChange in DESeq2 result
log2FoldChange DESeq2 RNA-seq DGEA
updated 11 months ago by 4.2k • written 11 months ago by ▴ 30
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Comment: Comment: Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
11 months ago by Sara ▴ 30
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1
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659
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Differentially expressed gene with high log2foldchange by DESeq2; but not meaningful at the individual level
DESeq2 RNA-seq DGEA
11 months ago by Sara ▴ 30
8
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6
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1.0k
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No differentially expressed genes after multiple testing correction in mice
edgeR DESeq2 Limma mouse RNA-seq
updated 12 months ago by 11k • written 12 months ago by ▴ 30
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1.0k
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
12 months ago by Sara ▴ 30
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2
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1.0k
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
12 months ago by Sara ▴ 30
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