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1,000 results • Page
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News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
9 weeks ago by
sina.majidian
▴ 20
1
vote
0
replies
182
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
10 weeks ago by
David Langenberger
11k
1
vote
1
reply
232
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
IGB Helper
• 0
0
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0
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214
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News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
248
views
News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
11 weeks ago by
bioinformatics.ca
• 0
0
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0
replies
196
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News:
Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R
manipulation
tidyverse
data
11 weeks ago by
Sole
• 0
0
votes
0
replies
217
views
News:
Online course: Reproducibility in Bioinformatics
Docker
Singularity
WorkflowManagementSystems
Reproducibility
11 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
282
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly
Nanopore
longreads
12 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
258
views
News:
Webinar about scRNA-seq cell type prediction
scRNAseq
updated 12 weeks ago by
GenoMax
142k • written 12 weeks ago by
jenny
• 0
0
votes
0
replies
280
views
News:
Online course: Spatial Omics in R/Bioconductor
R
Spatial-Omics
Bioconductor
tidyverse
transcriptomics
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
231
views
News:
Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference
Population-Genomics
Demographic-Models
updated 12 weeks ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
210
views
News:
Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R
Proteomics
Bioconductor
Mass-Spectrometry
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
214
views
News:
Virtual Workshops with the UConn Computational Biology Core
Workshop
genomics
updated 3 months ago by
GenoMax
142k • written 3 months ago by
mia.nahom
▴ 10
0
votes
0
replies
198
views
News:
NGS Data Analysis Courses for Absolute Beginners
NGS
DNAseq
RNAseq
singlecellsequencing
DataAnalysis
3 months ago by
David Langenberger
11k
0
votes
0
replies
214
views
News:
Online course: Genome Assembly and Annotation
Annotation
Genome-Assembly
Nanopore
Pacbio
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
196
views
News:
Online course: Computation Tumor Evolution
R
Cancer-Genomics
Tumor-Evolution
Genomics
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
194
views
News:
Course live online Intro Bayesian Analyses, March 4-8, 2024
R
python
bayesian
3 months ago by
Sole
• 0
0
votes
1
reply
992
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
3 months ago by
David Langenberger
11k
0
votes
0
replies
244
views
News:
Online course : Meta-Analysis in R
R
Meta-Analysis
Statistics
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
208
views
News:
Cellosaurus release 48 is available
cell-line
biocuration
cellosaurus
knowledgebase
3 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
243
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly
Nanopore
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
267
views
News:
BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI
BLAST
3 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
251
views
News:
EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
3 months ago by
EMBL Events
▴ 10
0
votes
0
replies
218
views
News:
Online course - Sex Chromosome Evolution
Evolution
Genomics
Sex-Chromosome
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
837
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS
Online-Workshop
updated 4 months ago by
Ram
43k • written 4 months ago by
David Langenberger
11k
7
votes
2
replies
1.2k
views
News:
NGS Data Analysis Workshops 2024
scRNA-seq
dna-seq
rna-seq
nextflow
4 months ago by
David Langenberger
11k
0
votes
0
replies
253
views
News:
Online course: Generalized Additive Models (GAMs) in R
R
Statistics
Gams
4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
280
views
News:
Online course - Introduction to Python for biologists
Python
Programming
NGSData
4 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
220
views
News:
Online course - Introduction to Machine Learning in R for omics data
R
Omics
MachineLearning
StatisticalLearning
4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
208
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
R
Flow-Cytometry
Bioconductor
updated 4 months ago by
Ram
43k • written 4 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
345
views
News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
4 months ago by
PeterC_NCBI
▴ 410
4
votes
0
replies
225
views
News:
Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq
NGS
Biologists
OnlineCourse
RNAseq
4 months ago by
David Langenberger
11k
0
votes
0
replies
266
views
News:
3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics
reproducibility
phylogenomics
transcriptomics
4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
587
views
News:
course - Reproducibility in Bioinformatics
Docker
Reproducibility
written 14 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
398
views
News:
Online Course - Genomic Prediction
Genomic-Prediction
Selective-Breeding
updated 4 months ago by
Ram
43k • written 4 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
291
views
News:
Flow cytometry data analysis with R/Bioconductor course
FlowCytometry
R
Bioconductor
5 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
551
views
News:
Unix and Shell Scripting for Bioinformatics course
Bash
Unix
Shell-Scripting
5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
338
views
News:
Bayesian Data Analysis in R course
R
Bayesian-Statistics
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
346
views
News:
Practical Hands-On Introduction to R course
R
Tidyverse
Data-Analysis
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
309
views
News:
Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics
Landscape-Genomics
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
298
views
News:
New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST
NCBI
BLAST
5 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
293
views
News:
Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R
Gene-Set-Enrichment-Analysis
GSEA
Bioconductor
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
312
views
News:
University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression
singlecell
rnaseq
5 months ago by
mia.nahom
▴ 10
0
votes
0
replies
287
views
News:
Online course: Introduction to Python, February 12th-March 11th, 2024
python
courses
5 months ago by
Sole
• 0
0
votes
1
reply
393
views
News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
360
views
News:
GWAS course
R
GWAS
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
312
views
News:
NCBI BLAST+ 2.2.15 now available for download
NCBI
Taxonomy
BLAST
5 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
317
views
News:
Course - Introduction to R Shiny
R
Data-Visualisation
Shiny
updated 5 months ago by
Ram
43k • written 5 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
290
views
News:
Online expert taught RNA-Seq workshop
workshop
5 months ago by
fturner
▴ 10
0
votes
0
replies
332
views
News:
Course - RNAseq in non-model organisms
Pacbio
RNA-seq
Nanopore
updated 5 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
1,000 results • Page
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Recent Votes
A: How is the design in DESeq2 work?
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
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Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
nguyenn6
• 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed
by
anton.i.petrov
• 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
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