updated 10 weeks ago by
Ram
43k
•
written 10 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
215
views
0
votes
0
replies
191
views
updated 11 weeks ago by
Ram
43k
•
written 11 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
197
views
0
votes
0
replies
185
views
11 weeks ago by
David Langenberger
11k
0
votes
0
replies
201
views
updated 11 weeks ago by
Ram
43k
•
written 11 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
186
views
updated 12 weeks ago by
Ram
43k
•
written 12 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
180
views
0
votes
1
reply
959
views
12 weeks ago by
David Langenberger
11k
0
votes
0
replies
232
views
updated 12 weeks ago by
Ram
43k
•
written 12 weeks ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
194
views
3 months ago by
Amos Bairoch
▴
120
0
votes
0
replies
236
views
updated 3 months ago by
Ram
43k
•
written 3 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
252
views
3 months ago by
PeterC_NCBI
▴
410
0
votes
0
replies
240
views
3 months ago by
EMBL Events
▴
10
0
votes
0
replies
207
views
updated 3 months ago by
Ram
43k
•
written 3 months ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
814
views
updated 3 months ago by
Ram
43k
•
written 3 months ago by
David Langenberger
11k
7
votes
2
replies
1.1k
views
3 months ago by
David Langenberger
11k
0
votes
0
replies
239
views
3 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
267
views
3 months ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
207
views
3 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
200
views
updated 3 months ago by
Ram
43k
•
written 3 months ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
324
views
3 months ago by
PeterC_NCBI
▴
410
4
votes
0
replies
206
views
3 months ago by
David Langenberger
11k
0
votes
0
replies
253
views
0
votes
0
replies
582
views
written 13 months ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
381
views
updated 4 months ago by
Ram
43k
•
written 4 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
282
views
4 months ago by
carlopecoraro2
★
2.5k
2
votes
2
replies
531
views
4 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
328
views
updated 4 months ago by
Ram
43k
•
written 4 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
335
views
updated 4 months ago by
Ram
43k
•
written 4 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
300
views
updated 4 months ago by
Ram
43k
•
written 4 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
289
views
4 months ago by
PeterC_NCBI
▴
410
0
votes
0
replies
283
views
updated 4 months ago by
Ram
43k
•
written 4 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
295
views
4 months ago by
mia.nahom
▴
10
0
votes
0
replies
279
views
0
votes
1
reply
375
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
355
views
News:
GWAS course
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
302
views
5 months ago by
PeterC_NCBI
▴
410
0
votes
0
replies
308
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
276
views
0
votes
0
replies
322
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
337
views
0
votes
0
replies
327
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
0
votes
3
replies
1.4k
views
0
votes
0
replies
363
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
317
views
1
vote
0
replies
322
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
4
votes
2
replies
2.9k
views
5 months ago by
Ming Tommy Tang
★
3.9k
0
votes
0
replies
402
views
News:
GWAS course
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
339
views
updated 5 months ago by
Ram
43k
•
written 5 months ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
558
views
News:
gnomAD v4 released
6 months ago by
Pierre Lindenbaum
161k
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
Mexico, 3 minutes ago
United States, 5 minutes ago
United States, 6 minutes ago
United States, 6 minutes ago
United States, 7 minutes ago
United States, 8 minutes ago
Recent Awards •
All
Popular Question to
hafiz.talhamalik
▴
350
Popular Question to
Hayler Edu
▴
40
Popular Question to
eesiribloom
▴
80
Popular Question to
g.persic1991
•
0
Popular Question to
massa.kassa.sc3na
▴
600
Teacher to
shenwei356
8.5k
Popular Question to
Apex92
▴
280
Recent Replies
Answer: RNA-seq data for deep learning classification
by
dsull
★
5.9k
Honestly speaking, if it's deep learning, it probably doesn't matter that much if you use something like TPMs (probably not raw counts, unl…
Comment: How does gene length effect the number of reads mapped
by
Chen
•
0
Thanks for the detailed answer and I really appreciate it! I still have one question about why the number of reads can be influenced by the…
Comment: Split Fastq Files Into Chunks Of 1M Reads
by
thomas.heigl.ibk
•
0
i tried it. it splits, however, when i compare the first 8 lines of the second split file with the according lines from the original file, …
Comment: DiffBind: no peaks in DBA
by
Ram
43k
> I've also included the txt version of my .csv file
No, you added a screenshot of plain text content, which is counterproductive. You can…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
At the GDC portal you have to turn the "therapeutic agents" toggle under "Clinical Data Analysis" on.
![drug][1]
For Breast cancer you c…
Answer: Loss of 'var' using concatenation of AnnData objects
by
Hugo
•
0
Similar question has been asked and answered on [scverse discourse](https://discourse.scverse.org/t/loosing-anndata-var-layer-when-using-sc…
Comment: Bacterial plasmid analysis
by
Zamin Iqbal
▴
20
Hi Nicole.
1. The clustering will be quite different between pling and the rep types (because plasmids with one rep type can still be ve…
Comment: Do I need to go back and filter my long-reads?
by
Ram
43k
Do not delete posts that have received feedback. Engage with the user providing you feedback.
Answer: Download eQTL data of one specific gene for all tissues from GTEx
by
bk11
★
2.4k
Please kindly check your result here. You can click `csv` and download the date in this [link][1].
**OR**
If you prefer to use R, there i…
Comment: RNAseq one control two conditions, shared and exclusive genes
by
matteo.levorato
•
0
but why not a single matrix with the 3 different condition and then by lfcShrink function get the DEGs of each condition?
Answer: Super ehancers
by
jared.andrews07
★
16k
Sure, you can run it on them. Stitching tends to happen less frequently since the ATAC peaks are generally less wide than H3K27ac, but it'l…
Answer: What purposes can TPM values be used for?
by
jared.andrews07
★
16k
TPMs cannot be used for intersample comparisons, but they can be used for intrasample comparisons (e.g. comparing relative expression level…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
•
0
Thank you so much for the recommendation and the very clear explanation , it's much appreciated. I have already made core-gene phylogenies/…
Comment: What purposes can TPM values be used for?
by
Adam
▴
30
Have you run FASTQC and checked the mapping efficiency of WT3?
> would running DESeq using TPM values help solve my problem?
No, DESeq sh…
Answer: How goes gene length effect the number of reads mapped
by
i.sudbery
19k
See my answer about the what hows and whens of RNA-seq normalisation here:
https://www.biostars.org/p/9586553/#9586566
Traffic: 2654 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6