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24 results • Page
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News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
11 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
423
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
3 days ago by
David Langenberger
11k
1
vote
2
replies
273
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 9 days ago by
Weiwen
• 0 • written 10 days ago by
MICOS
▴ 10
2
votes
0
replies
155
views
News:
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics
SNPs
LocalAdaptation
GIS
7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
186
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 21 days ago by
Ram
43k • written 21 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
153
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 23 days ago by
Ram
43k • written 23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
146
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 22 days ago by
Ram
43k • written 22 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
143
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 16 days ago by
Ram
43k • written 16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
64
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 5 hours ago by
Ram
43k • written 12 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
204
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
119
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
9 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
123
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
24 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
162
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 25 days ago by
Ram
43k • written 26 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
239
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 20 days ago by
Ram
43k • written 20 days ago by
Claire Watson
▴ 60
0
votes
0
replies
146
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
13 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
133
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
118
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 14 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
127
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
126
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
198
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
120
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
84
views
News:
New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning
TScourses
1 day ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
180
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 16 days ago by
Ram
43k • written 16 days ago by
Chakri
• 0
0
votes
0
replies
222
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
24 results • Page
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Recent Votes
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
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Answer: Details on salmon index
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Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
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Recent Replies
Answer: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err
by
Nikki Harris
• 0
Hello It appears that the file path or file permissions may be the cause of the problem. Verify that the file "/geneInfo.tab" is present…
Comment: Add line under stat test
by
Nyksubuz
▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range
by
Nyksubuz
▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
• 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite
by
dario.garvan
▴ 520
It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
GenoMax
142k
Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful. [1]: https://github.com/lastz/lastz
Comment: Collect dispersed executable files and run them by using bingo.
by
Ram
43k
What is the purpose of this tool? I have `~/bin` in my $PATH and I soft-link all executables I need to that location so why install a new t…
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
Can you try this? library(dplyr) seuratobj@meta.data <- seuratobj@meta.data %>% mutate(seurat_clusters = recode(seurat_clu…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
Thank you for the response but it does not change anything.
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
I have not tested but you could try something like below- seuratobj$seurat_clusters[seuratobj$seurat_clusters==5]=0 seuratobj$seur…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
I know about it, isn't there a simple C++ static binary?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
needle is great! but it does not handle sequences of 100k or so.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
by
txema.heredia
▴ 130
The point is that you need to feed the ambient algorithm a clustering list as input. This way, it checks for genes present in the soup vs g…
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
swbarnes2
14k
Wait, so the magnitudes of the PCs are in the thousands? That's not normal for RNASeq.
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