Entering edit mode
10.0 years ago
umer.zeeshan.ijaz
★
1.8k
Please find shell wrappers for some of the EMBOSS utilities to make them compatable with metagenomic whole-genome shotgun contigs:
- compseq.sh: calculate the composition of unique words in sequences
- dan.sh: calculate nucleic acid melting temperature
- density.sh: calculate nucleic acid density
- cpgreport.sh: identify and report CpG-rich regions in nucleotide sequence
- newcpgreport.sh: identify CpG islands in nucleotide sequence
- fuzznuc.sh: search for patterns in nucleotide sequences
- fuzztran.sh: search for patterns in protein sequences (translated)
- freak.sh: generate residue/base frequency table
- etandem.sh: find tandem repeats in a nucleotide sequence
- tcode.sh: identify protein-coding regions using Fickett TESTCODE statistic
- getorf.sh: find and extract open reading frames (ORFs)
Best Wishes,
Umer
