Error in importing data from 10x genomics into RStudio
Hello all, I am trying to import an H5 file dataset from 10x Genomics into RStudio:
Gene Expression - Feature / cell matrix HDF5 (raw)
But I get an error:
invalid multibyte string at '<89>HDF'
I am not able to import the dataset because of this.
Please could someone advice?
Thank you
Himan
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himanshu0102 •
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Please post exact code/packages you are using. It is unclear what you are doing at this time.
can you cite the data set which one you trying?
I am using the Seurat package for scRNA seq analysis.
I am following this link:
https://biostatsquid.com/scrnaseq-preprocessing-workflow-seurat/
But when i try to import data set into RStudio i get the error:
invalid multibyte string at '<89>HDF'
Because of which i am unable to import data into Rstudio.
Is there any way around this?
Thank you.
Are you trying to follow the tutorial you linked? Do you get the error on step 1 that is
import data?Yes, that is correct.
to help you and at the same time other can help when you can cite what exactly you had ran the code, the Seurat version R session info etc, please provide them since other people can't make a guess what and how you did. So it would be helpful and beneficial if you can provide the information
Please learn how to ask a good question. We are unable to help you given the information provided.