Assessment of upstream/downstream variants

Hello everyone, How to assess wether my upstream/downstream variants fall within a regulatory sequence or promotor/enhancer? Can you recommend a tool that doesn't require programming skills? Thank you

downstream_variant variant_annotation upstream_variant

• 595 views • link

written 1.6 years ago by Nesma •

0 answers

No answers yet.

More posts like this

Proposal on CNV (Copies Variants Numer) analysis tools
written 1.2 years ago by AIMAR •

Hello everyone, hoping you all doing well. If anyone can recommend a tool for analyzing copy number variants on somatic data, please let me know. …
power analysis and rare variants
written 6.2 years ago by monaallouba •

Hello, I need to assess how many individuals I need to sequence to find all variants with an allele frequency <0.001 with a power of …
Defining the genomic context given a genomic position
written 7.7 years ago by mike •

Hi all, How can we find out the genomic context (genomic elements) given a genomic position (such as given a bed file). Is the position …
How can you sort variants based on their positions from upstream to downstream?
written 8.4 years ago by bioinfo89 •

Hello! I have a set of variants with coding sequence positions for eg: c.-3A>C c.134+1G>A c.*5362T>C ~10,000 of such variants in a single file. **Aim:** …
Regulatory Network Tool
written 9.3 years ago by rvrob3000 •

Hi everyone, I have been looking for a tool in order to build a gene regulatory network. Long story short, I have a set of …
Job: PhD scholarship in computational genomics and transcriptional regulatory variation (Copenhagen…
written 9.9 years ago by Robin Andersson

The Andersson lab is looking to recruit a highly motivated and talented PhD student to focus on enhancers and transcriptional regulatory variation. Context ------- The …
Localize TFBS, Search annotation
written 10.9 years ago by jaqy •

<p>hello,<br /> i have a set of validated TFBS, and i would like determine each TFBS in these promoter sequence how can i localize TFBS …
Annotating SNPs for promoter and enhancer regions
written 11.1 years ago by siddharth.sethi5

Hi Everyone, I am trying to annotate Snps and identify those snps which fall within promoter and enhancer regions. I am doing this using Mouse …
regulatory regions discovery and alignment
written 11.3 years ago by elb

Hi guys! I have the sequence (cDNA) of the "x" expressed gene. I would like to discover putative regulatory regions (ex: the promoter region) upstream …
Analyzing genetic context/gene synteny of hundreds of sequences.
written 11.4 years ago by pawlowac

Hi everyone, I'm looking at analysing the genetic context which my gene is found in among hundreds of genomes. I have the sequence for 5kb …