SnpEff and Snpsift
Hello,
In the SnpSift annotation what does E_Multiple_observations and E_Freq mean?
Thanks in advance!
snpsift
snp
snpeff
annotation
• 958 views
•
link
updated
by
Istvan Albert
10K
• |
written
by
RD
3
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Extract cis and trans mutations from bam file
written by RD 3Hi All, I have annotated SNPs from a VCF file, and at position 110294564, there is a primary mutation, let's call it P260R. I want …
-
CHIPSEQ Analysis , DiffBind Parameters
written by RD 3Hello, Regarding Diffbind, How does diffbind calculate common peaks with the samples. I'm observing that certain peaks identified as common using bedtools intersect are not …
-
HOMER known motif is unpublished
written by buffealo 13Hello, I just conducted a motif analysis with HOMER and the top ranked result in the known motifs list is "unpublished". What does that mean …
-
question about seurat figure PC_heatmap
written by yueli7 25Hello, Does anyone know what is the mean of the following figure? I know it is heatmap, what is the meaning of four blocks? It …
-
DNA mutation annotation
written by dr.genetics 6I am working on MT DNA and trying to decipher the MT phylotree17. I understand 1234G means there is a Ref => G mutation. But …
-
BLAST & Bowtie
written by caombrat 1Hello, DeAnnIso is a bioinformatic tool for detection of isomiR. When you want to upload your data you should change two **parameters** in the name …
-
Converting different annotation file formats (GTF/GFF/BED) to each other
written by Javad 15Hello everybody, What is the most efficient way to convert different annotation file formats to each other. GFF --> GTF GTF --> BED Thanks in …
-
dbsnp in vcf format compatible with hg38
written by apocalyps52 4Hello, I need to annotate the snps in a vcf file that I generated from hg38 reference. I try to use SnpSift for annotation however …
-
bcftools view options
written by 897598644 11Excuse me: In the command of `bcftools view -bvcg`, what does the option `-b` mean? Thanks in advance!
-
P-values distribution meaning
written by Juan Cordero 14Hi dear community, Could anyone tell me what changes in the p-value distribution mean? I mean, for example, what does mean that the p-values follow …
check the VCF header, it ought to have more information on what these are, sounds like annotations that refer to how many samples contain the variant