Converting different annotation file formats (GTF/GFF/BED) to each other
Hello everybody,
What is the most efficient way to convert different annotation file formats to each other.
GFF --> GTF
GTF --> BED
Thanks in advance.
• 4,689 views
•
link
updated
by
alejandrogzi •
•
written
by
Javad
•
written
by
Javad
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tool: gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
written by alejandrogzi •
-
GTF file tomato
written by javadkarimi10 •
-
Generate GTF file
written by daewowo •
-
What is the output of rna-seq alignment to reference transcriptome (FASTA+GTF) look like in SAM for…
written by sonsunjirachote •
-
converting .gff file to .gtf
written by kudzu •
-
How to run a Perl script
written by Javad
-
Converting GTF file to UCSC-styled bed file
written by Javad
-
How to manipulate a gff or gtf file manually?
written by Javad
-
Annotation file formats
written by Pfs
-
Extracting regions from .bam file using a .gff or .gtf file
written by Tom A •
Thanks It was very helpful.
If you need to reverse the conversion (e.g. BED -> GTF), here is recently developed tool written in rust bed2gtf
now there is also bed2gff if you want to convert .bed files to .gff3 files!