HOMER known motif is unpublished
Hello, I just conducted a motif analysis with HOMER and the top ranked result in the known motifs list is "unpublished". What does that mean to be in the "known" results exactly? Thanks in advance.
chip-seq
motif
homer
motif finding
known motifs
• 1,673 views
•
link
written
by
buffealo •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
HOMER peak-motif relationship as direct-indirect binding
written by buffealo •Hello, I am conducting ChIP-seq analysis. I have HOMER annotated motif list assigned to every peak in MACS2 result. I have an example ![ANNOTATED KNOWN …
-
HOMER average conservation information
written by buffealo •Hello, I have HOMER motif analysis results with the annotation informatin. I have the same format files like here; [Quantifying Data and Motifs and Comparing …
-
Discrepancy in HOMER output
written by doan.dinh •Hello, I need some help understanding how HOMER motif finding works. I have a ChIP-seq data for a transcription factor that I want to look …
-
HOMER findMotifsGenome.pl Local Optimisation Phase
written by janepuh12 •Hello, I am using Homer for de novo motif discovery in ChIP-seq peaks in BED format. After a local optimization phase, I receive a message: …
-
Homer [findMotifsGenome.pl] result interputation.
written by chiefcat1. **Are the motifs in known motifs & de novo motifs results comparable (e.g. their p-value)?** Because I want to combine them into one ranked …
-
Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias a…
written by chiefcatHi everyone. I'm trying to find the motifs bound by my ChIP-ed protein using Homer. I don't have knowledge regarding NGS analysis. The analysis was …
-
Further analysis after motif finding?
written by tamadomi •I have been trying yo analyse the results from the motif analysis I performed with Homer, comparing the motifs in my 2 treatments and finding …
-
Motifs: de novo vs known, number of hits
written by tamadomi •Hi! I'm analysing ATAC-seq data from cancer tissue and normal tissue. I am now analysing the results from Homer after doing the motif finding step. …
-
Homer known motif analysis
written by pinky_pinkpinky •Dear Users, I am intetested in identification of known motifs for my peaks generated using homer. I used homer for peak calling as well as …
-
How to separate chip-seq peaks which are enriched for known TFs motifs from given list of peaks
written by Naresh D J •Dear All, I have a list of enhancer marks in terms of peaks file from chip-seq data (three column, chr, start, end) and run motif …
Search the motif id in JASPER. Homer compares the discovered motifs with JASPER known motifs,
Hello and thank you for the answer but what is exactly motif ID?