Hey everyone, only Greengenes does species level taxonomic classification. Other custom 16S databases of Kraken2 (SILVA and RDP) doesn't do that. It's because they prepared …

Hi, I am looking for a fasta file that contains mouse rRNA sequences, but I noticed that the links I searched on the internet point …

Hello, I'd like to use blast2ge version 2.3.5 to get the GO term of my genomes, old version NCBI NR database with gi numbers is …

Hi, I want to perform a blast using local P450 database, however, I can't find any fasta file contains all P450 sequences. Can someone please …

Hi, I downloaded dbsnp 151 version of vcf file. I found that vcf file is using the Grch38p7 database. I have HG38 database which sequence …

Hi, I wanted to run SortMeRNA for multiple reads file. but as I know SortMeRNA handles only single file at once. Although it is working …

Hi, all Recently I need to do some analysis about ribosomal profiling data. A lot of papers recommended to filter rRNA sequences before mapping to …

Hi all again! I have a list of bacteria species and I would like to find primers that can amplify that list. First, I checked …

Hello everyone, I am fairly new to **QIIME** and I am finding it troublesome to work with it. I have mouse 16S data obtained with …

Hi, Yesterday i setup a local Silva 123 database for Blastn. makeblastdb -in LSU.fasta -dbtype nucl -out Silva_LSU blastn -query Test.fasta -db Silva_LSU -out test/ …