After many many hours testing and searching on Internet, I can't make a database alias using the blastdb_aliastool. It starts with a very **un**documented NCBI …

In 2016 NCBI announced that it will phase out GI numbers. https://ncbiinsights.ncbi.nlm.nih.gov/2016/09/12/the-future-of-existing-gi-numbers-at-ncbi/ And the documentation says: "Special note for sequence databases. NCBI is no longer …

Hello All, I want to download all the Genomes of Pseudomonas aeruginosa from [NCBI genomes database][1]. As of now (23/10/2020), there are 5556 genomes for …

I want to get GO annotation from protein accession number or gi in NCBI NR database, I find the mapping file from [https://ftp.ncbi.nih.gov/gene/DATA/gene2go.gz][1]. However, it …

Hi, is there anyone have downloaded GO annotation file which contains nr database protein accession number and its related GO term? each line of this …

Hi everyone, I want to make a blast database of insect proteins to locally blast my transcriptome assembly. I dowloaded all the accession numbers associated …

I have know that NCBI has (or is about to) [stopped supporting gi numbers.][1] It change to use Accessions. I have use ["Question: Vertebrate Subset …

Hi. I need to download all available fungal genomes for my community analysis using kraken (sequence classifier tool). It doesn't have any assistance for acquiring …

I have NCBI nr database. I would like to retrieve all the Gene Identifier (GI) IDs from it. Which will be best way to do …

<p>Hello,</p> <p>I&#39;d like to study how NCBI&#39;s non-redundant protein database (nr) has developed over the years. However, I&#39;m yet to find a way to download …