Tajima's D

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4 months ago

sevda • 0

Hello

I need calculate Tajima's D but vcftools deprecated which software can I utilize?

Tajimas-D • 497 views

ADD COMMENT • link updated 4 months ago by Michael 54k • written 4 months ago by sevda • 0

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why do you think is deprecated? I see it on the manual

ADD REPLY • link 4 months ago by JC 13k

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vcftools received its last update in 2018 where as bcftools is being actively developed.

How to calculate Tajima's D using bcftools : https://github.com/johnlees/tajima-D

ADD REPLY • link 4 months ago by GenoMax 141k

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Fair to mention that the windowed calculation is built-in in vcftools while you need to compile the app from github for use with bcftools.

ADD REPLY • link 4 months ago by Michael 54k

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