How to generate gene abundance table and presence and absence matrix with HMMER tblout files?
I have many files = file.tblout for several metagenomes and I need to generate a gene abundance table where I have the columns sample ID, gene abundance. And I also need to generate a presence and absence matrix where I have the columns: sample ID, gene1, gene2, etc. Where absence is 0 and presence is 1. How to generate these tables from the tblout results of the hmmer annotation? This is the first time I've done this and I need some guidance.
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projetos •
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What have you tried?
I still haven't found any solution. I do not know where to start. Please! Can you help me ?
Have you tried opening a tblout file or viewing its contents? You must have tried something!