How to Create an HMMER Profile with VFDB Files?
How do I create an HMM profile using the files from http://www.mgc.ac.cn/VFs/ to run HMMER? I have the file.faa after running Prodigal and I need to generate a profile with hmmbuild called profile.hmm. This is my first time creating a profile in HMMER and I'm looking for guidance on how to carry out this profile creation process with hmmbuild and VFDB.
• 1,514 views
•
link
written
by
projetos •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to generate gene abundance table and presence and absence matrix with HMMER tblout files?
written by projetos •
-
cannot find genes with abricate and VFDB
written by luciano.g •
-
Issue with hmmcalibrate during tutorial.
written by apcreyes29 •
-
Alignment input parse error
written by kexin •
-
Generate HMM profile without an MSA (hmmer)
written by elenatea.russo •
-
Running HMMER via Python
written by Ghoti •
-
Problem in execution of the commands in HMMER
written by PriyaD •
-
Hmmer Alignment input parse error
written by hivemind •
-
is there a tblastn-version of hmmsearch i.e. search protein profile against nucleotide database?
written by wl284 •
-
How to use HMMBUILD
written by h.botond •
What would be the steps to create an hmmer profile? I can't find it in the documentation
Please try to understand how to use the forum properly. Read these posts: https://www.biostars.org/tag/how-to/
What was the intention behind you adding this "answer" to your post?