Comparison of bed files and output matrix
How to compare all fragments of multiple beds with the set fragments of these beds one by one, and use all fragments of the set as the first column. The number of overlapping times between each bed file fragment and the set fragment is listed in the following columns to form a matrix output, and draw a COOC graph to obtain the results
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GenoMax
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1934822857 •
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how is it different from your previous (unvalidated) questions ? How to compare multiple bed files with a collection of these bed files one by one, calculate the number of overlapping fragments, and output to form a matrix
In the previous post, due to my unclear description of the problem, the answer provided could only provide the number of repeated segments. However, I would like to know which segments in each bed file and the number of repetitions in the set bed file are missing, as well as which segments are zero repetitions compared to the set bed file. I really need your help, and I would greatly appreciate it if you could provide me with a solution
Then instead of posting a new question you should include this information in that thread.