UCSC Genome Browser Custom Track Blank
0
0
Entering edit mode
6 months ago
Daniel ▴ 30

Hello,

I have a bigwig (.bw) file which I can properly view on IGV. IGV makes it very difficult to edit the figure nicely so I am trying to view it in the UCSC genome browser. I uploaded my data to cyverse and used the custom track line here:

track type=bigWig name=“DMSO” color=255,255,255 visibility=2 bigDataUrl=https://data.cyverse.org/myDataURL/DMSO.bw

However, this successfully uploads but shows no shape/peaks. I believe some data is there though, because if I hover over the empty white-space, numbers appear around my cursor. Could anyone please tell me what I'm doing wrong? Sorry for my ignorance.

Thank you so much.

customtrack UCSC chipseq • 436 views
ADD COMMENT
0
Entering edit mode

wrong URL:

wget -O - https://data.cyverse.org/myDataURL/DMSO.bw 
(...)
Proxy request sent, awaiting response... 404 Not Found
2023-11-17 09:11:59 ERROR 404: Not Found.
ADD REPLY
0
Entering edit mode

Hahaha sorry, I should have said the URL is fake (I can't share the data). But I can confirm it works, because when I copy/paste it into a browser the data can be downloaded. That same data then shows peaks on IGV.

ADD REPLY

Login before adding your answer.

Traffic: 1938 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6