How to find transcription factor in my gene set

HI guys

I have a transcription factor (TF) and 50K gene set and I want to see which gene is related to TF

Any help?

ishak

transcription-factor

• 1,066 views • link

updated 2.8 years ago by Ram

• written 2.8 years ago by Ishak •

Unclear what you're asking. Define "related to TF"?

• 0 views • link

written 2.8 years ago by ATpoint

0 answers

No answers yet.

More posts like this

TF finding from motif discovery
written 7.0 years ago by Calangoa •

I want to find what transcription factor related to each motif(For example ATACGAG) What website do you suggest? I used RSAT but it doesnt work …
Getting interesting gene ontology analysis result
written 8.8 years ago by bharata1803

I want to ask about gene ontology analysis. So, I have around 1,200 transcription factor genes ID (EnsEMBL id). I have done some clustering on …
Tool for predicting transcription factors from a gene list
written 9.2 years ago by hkarakurt

Hello, I have about 150 human genes. I want to build a transcription factor-gene network so I need to find which TF binds to which …
is there any source for TF(transcription factor)-TG(target gene)?
written 9.7 years ago by Kurban

Hello guys, I have more than 800 animal transcription factor sequences from ensemble. I want to find their target gene sequences. Could anyone tell how …
JASPAR motifs download
written 10.1 years ago by bharata1803

Hello, Currently, I want to make a list of Transcription factor-target gene pair. From this [ensembl regulatory database][1] I got the location of regulation region. …
removing and keeping some part of a matrix of genes interaction
written 10.6 years ago by zizigolu

Hi, I have a complete list of transcription factors in Arabidopsis thaliana like below ``` TF <- read.table("whole TF.txt", header = T, sep = "\t") …
removing gene-gene interaction from a correlation matrix
written 10.6 years ago by zizigolu

Hi, I have a list of transcription factors like below ``` TF <- read.table("whole TF.txt", header = T, sep = "\t") > View(TF) AGI_ID AT1G01010 …
transcription factor /miRNA enrichment analysis
written 10.8 years ago by ramyabhargavi •

hi, I am looking to do transcription factor (TF) and miRNA enrichment analysis. I have a list of DE genes from RNAseq experiment and I …
number of transcription factor binding sites
written 11.3 years ago by sasa •

Hi all! I use MEME to predict the transcription factor binding site, and it gives me a exact specific position. I want to know a …
Transcription Factor Matrix Id To Gene Symbols
written 12.4 years ago by Min •

Hi, I have some problems with mapping transcription factor matrix id (from TRANSFAC and JASPAR) to gene symbols. (eg. V$MAFB_01 -> gene symbols? V$CREBP1_Q2 -> …