TF finding from motif discovery
I want to find what transcription factor related to each motif(For example ATACGAG) What website do you suggest? I used RSAT but it doesnt work that good. My imput data is gene symbol and I want to know motif from up stream of the genes then finding TF for that region.
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Calangoa •
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Calangoa •
2 answers
TomTom (http://meme-suite.org/tools/tomtom) will match a de novo found motif to possible known transcription factor binding motifs. I will work better if you can provid it with a PWM rather than a consensus sequence, but it will work from a consensus sequence.
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Hello Calangoa!
Questions similar to yours can already be found at:
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PS: Please follow up on your previous post where the same answer was given as here.