Tool for predicting transcription factors from a gene list
Hello,
I have about 150 human genes. I want to build a transcription factor-gene network so I need to find which TF binds to which gene?
Which online or desktop tools should I use to find possible transcription factors for my genes?
Thank you,
2 answers
EnsEMBL Regulation annotates regulatory features of the human genome, including transcription factor binding sites. There are also a few databases with promoter annotations e.g. TRED. Other database e.g. TRANSFAC provide information about transcription factors targets.
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Jean-Karim Heriche
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BioinfGuru
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