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How to give the defined p value in MACS2 command line (peak calling)

I am using this command line for peak calling but it automatically sets the p-value to 0 .05 I want to change it to 0.01. Please suggest where I have to set it to 0.01

Please suggest This is my command line macs2 callpeak -t test_sorted.bam -c control_sorted.bam -f BAM -g hs -n testvscont -B --outdir testvscont _macs2

value p
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updated by ATpoint ATpoint • written by lonekaisar72 • lonekaisar72

then upvote and accept, that's what he was asking you.

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written by ATpoint ATpoint

1 answer

Please read the manual, it's all there: https://github.com/macs3-project/MACS/blob/master/docs/callpeak.md

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written by ATpoint ATpoint

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