Hi guys, I have a question about MACS2 to call peaks from either chip-sew or ATAC seq. When I used macs2 to call peaks, the program used hs for human genome, which corresponds to hg18. But in later analysis, when I useD homer to find motifs in peaks, I used hg19. Is there any influence since the position of genes in different genome project is different? Thanks. Here is the scripts: /usr/local/macs2/latest/bin/macs2 callpeak --outdir -t * -c * -n * -g hs -B --keep-dup 1 --nomodel --shift -75 --extsize 150 -q 0.01 /home/users/homer/bin/findMotifsGenome.pl *.txt hg19 *_discover/ -size -100,100 -mask -S 50