Interpreting the CpG pearson correlation plot
I have performed DMR analysis using Methylkit and have generated the correlation plot but i am not able to interpret it completely. Apart from the correlation % what do the bar plots, color and x and y axis signify?
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bioinfo_ga •
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You're best off showing an example figure
If you are talking about this :
You have in the bottom left scatter plots of %methylation values for each pair of samples In diagonal, you have histograms of beta-value distribution for each sample
yes i was talking about the same plot. Thank you