How to obtain data on the specific location of the segumental duplication.
I know it can be viewed from the Repeats segemental dups at the bottom of the UCSC, but I would like to view it in the IGV, not the UCSC.
So I looked for the golden path in UCSC to find the segemental dups data file, but could not find where it is.
I am looking for it in hg19, where should I look next?
1 answer
Segmental Dups Track Settings
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=genomicSuperDups
https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/genomicSuperDups.txt.gz
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Pierre Lindenbaum
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