Fastp
1 answer
Yes FASTP can detect unknown adapters. See README
# adapters
Adapter trimming is enabled by default, but you can disable it by -A or --disable_adapter_trimming. Adapter sequences can be automatically detected for both PE/SE data.
For SE data, the adapters are evaluated by analyzing the tails of first ~1M reads. This evaluation may be inacurrate, and you can specify the adapter sequence by -a or --adapter_sequence option. If adapter sequence is specified, the auto detection for SE data will be disabled.
...
Log in to answer this question.
More posts like this
-
Calculate Jukes-Cantor, Kimura, Tamura-Nei etc distances from BAM files
written by James G •
-
Are truseq adapter sequences picked up by FASTQC?
written by bioinfo •
-
Adapters finder
written by akis •
-
Adapter trimming using fastp
written by Shin Taguchi •
-
Is there any way to normalize a sample with high number of reads assigned to it?
written by salman_96 •
-
Cutadapt or Trim Galore for SMART-seq?
written by Youyy •
-
Copy number variation data for population structure analysis
written by rthapa •
-
Detection of duplicated regions in RNA-seq data
written by Ankit
-
How to Remove Reads Found in Negative Controls from Experimental Samples
written by kdevakan •
-
Barcodes and Adapters in color space files
written by Hatem Elshazly •
