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Found some plasmids in my sequence. IS there any tool or process by which i can find whether there are any AMR genes within those sequence?

I've come across plasmids in my sequence and would like to determine if there are any antimicrobial resistance (AMR) genes present. Is there a specific tool or method available for this purpose?

wgs
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updated by Ram Ram • written by Mustafa • Mustafa

Stop using bioinformatics as a tag. Every single post on this forum is related to bioinformatics.

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written by Ram Ram

2 answers

There's another related pipeline/tool that simplifies the running of AMRFinder Plus and collates results nicely: https://github.com/MDU-PHL/abritamr (publication: https://www.nature.com/articles/s41467-022-35713-4)

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written by dr_cfoster dr_cfoster

I downloaded it but what should i give in the command line?

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written by Mustafa • Mustafa

Read the manual.

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written by Ram Ram

I am fairly new to this, could you give me a run down on how to do this?

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written by Mustafa • Mustafa

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