Hello I hope you are doing well; I am running into this issue when I am trying to run dba.count().

This is the code I am using:

Create a new DBA object using the subset data
myDBA <- dba(sampleSheet = subset_data)
myDBA <- dba.count(myDBA, bUseSummarizeOverlaps=FALSE)
print(myDBA)

It does the following: Computing summits... Re-centering peaks... Reads will be counted as Paired-end. Error: No sites have activity greater than filter value.

However I also tried to do the following:

myDBA <- dba.count(myDBA, bUseSummarizeOverlaps=FALSE)
print(myDBA)

But I get the same error

Re-centering peaks... Error: No sites have activity greater than filter value.

Any ideas on what this error is indicating or how I can fix it?