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"Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'assay': subscript out of bounds" error DiffBind count (dba.count))

Hello,

When I am trying to use dba.count in DiffBind, I am getting this error;

peaks <- dba.count(peaks,  bParallel=FALSE) 

Computing summits...  

Sample: sample1.bam125 

Sample: sample2.bam125  

. 

. 

. 

.    

Re-centering peaks... 

Sample: sample1.bam125  

 Reads will be counted as Single-end. 

Error in h(simpleError(msg, call)) :    error in  evaluating the argument 'x' in selecting a method for function  'assay': subscript out of bounds

I was getting the same error but like this:

   Error in h(simpleError(msg, call)) : 
    error in evaluating the argument 'x' in selecting a method for function 'assay': error in 
  evaluating the argument 'BPPARAM' in selecting a method for function 'bplapply': attempt to 
  select less than one element in get1index

I could solve by this post.

But this time error is popping up in a different way and I could not solve it. If you could help me I will appreciate it.

countingpeaks diffbind chipseq
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updated by Rory Stark Rory Stark • written by buffealo • buffealo

Hello, were you able to solve this error?

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written by Mohan • Mohan

I have seen this issue reported a number of times recently and would like to get to the bottom of it, if someone could supply with me an example including the full sequence of DiffBind calls so I can attempt to reproduce it.

• 0 views • link
written by Rory Stark Rory Stark

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