How to read PAR variants in chr23 from .bgen file?
Hi
I want to view how my .bgen is formatted (dosage and other stuff) for PAR and non-PAR variants in chromosome 23. I have the index file and the sample file as well. would you please help me?
• 913 views
•
link
1 answer
David, if you're comfortable with Python, please take a look at the bgen-reader package and see if it might be useful for you. I'm a co-author of the program and am available to help with specific questions and problems.
-- Carl
Carl Kadie, Ph.D. (computer science), FaST-LMM & PySnpTools Team, (Microsoft Research, retired) carlk@msn.com
• 0 views
•
link
Log in to answer this question.