Retrieve deseq2 normalised counts with only results file available
I have several Deseq2 results file, so a csv file with ensembl name, baseMean , log2FoldChange, lfcSE, stat, pvalue, padj columns. Unfortunately, I don't have the original count files.
Is there a way to extract Deseq2 Normalised Counts from the results file only? Is this possible?
Thanks in advance
2 answers
No, this information is lost.
Note that without counts and raw data at hand your analysis is not reproducible, so treat results with care. I would personally not even use the results productively other than for internal hypothesis generation since you can never rerun analysis.
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