.fas or .fasta to .axt for KaKs Calculator
How do I convert a .fas or .fasta file into .axt?
I tried to run the .fas/.fasta file of my aligned sequences that I edited thru BioEdit. But the Ka/Ks value results in N/A and now I'm stuck.
Example .fas file:
• 2,191 views
•
link
0 answers
No answers yet.
Log in to answer this question.
Past thread that may be useful:
Fasta to axt - KaKs Calculator
I saw this thread but unfortunately I'm not familiar with Python(?).
If you have an aligned fasta file as shown in the example in thread linked above you can use the commands shown in the thread. No programming needed. Replace your file name in place of
example-file.fastaorfile.fadepending on the answer you use.It gave an error: "^ invalid char ''' in expression". I tried to fix it it but errors just keep on appearing.
Can you show output of
head -5 your_aligned.fa?This is my .fas file: