More posts like this
-
single cell: differential expression between cluster subsets
written by Lee •Hello, I'm currently running a single cell analysis, and I have question that I would like to check whether it makes sense statistically, or maybe …
-
Multiple samples and species with kallisto bus(tools)
written by tritone_858 •Hello Biostars, I'm working with a single nucleus RNAseq dataset generated via 10X. I've got 8x samples, which usually I'd run individually through cellranger and …
-
tBLASTn search in wgs database: how to specify the organism?
written by Nina •Hi, I'm interested in searching the wgs database for specific organisms as I can easily do on the website: ![enter image description here][1] But I …
-
Question about datasets with multiple single cell RNAseq types (SC3PV2 and SC3PV3)
written by hgalmoore •Hi, I'm looking at a dataset that has two types of single-cell technology types. Roughly half the samples were run in SC3PV3 and half in …
-
Genbank submission problem
written by hs •Hi there, i am new about these subject. maybe this problem can be simple. i will submit my metagenome-assembled phage genome. i generated annotation file …
-
Tutoring in Comparative Genomics of Metabolic Pathways
written by la_ff •Hi everyone, I'm looking for a tutor to help with bioinformatics for doing some comparative genomics. I'm completely new at bioinformatics and am trying to …
-
prinseq and sickle
written by kanyerezi30 •Hello members, I have installed prinseq and sickle using conda but i have failed to access them I have tried searching using 'which prinseq' and …
-
linux command in a perl script problem (sam to fastq)
written by rob234kingI'm trying to run this linux command which converts a sam file to fastq reads file and works on the command line to work from …
-
Realignertargetcreator Error: Not Enough Memory
written by xiaoyanli82 •<p>Hi, everyone</p> <p>I use GATK to realignment the <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a> files, which is about 400M, the command I ues is :</p> <pre><code>java -Xmx24g -jar GenomeAnalysis.jar …
-
Read Blast Output Directly From Stdout With Bioperl
written by Pasta •<p>Hi there,</p> <p>I finally decided myself to try Perl for a project and I got a question concerning BioPerl. I would like to read the …
Your best bet is to contact Kbase support: https://kbase-jira.atlassian.net/
We don't see may questions about Kbase here.