Question about datasets with multiple single cell RNAseq types (SC3PV2 and SC3PV3)
Hi,
I'm looking at a dataset that has two types of single-cell technology types. Roughly half the samples were run in SC3PV3 and half in SC3PV2. There seems to be a noticeable difference in UMAP in some populations that should be the same. My question is, is it okay to integrate on the 'single-cell type' parameter? I cant really find any info online on how V2 and V3 differ from each other.
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