Cluster/group samples based on scRNA data
Hi all,
I have ~50 samples with each being profilied by scRNA. By UMAP of each individual sample, I can clearly see 3-4 distinct patterns among these samples. Now what is the appropriate way for me to group these samples according to their similarity to each other based on scRNA data? The desired output plots could be something like dendrogram of hierarchical clustering, correlation matrix, etc.
Thank you.
Patrick
1 answer
I recommend going through https://bioconductor.org/books/release/OSCA.basic/clustering.html to get the basics of scRNA-seq going.
Log in to answer this question.
More posts like this
-
Cluster annotation in single cell
written by synat.keam •
-
Close correlation between differentially-expressed genes
written by psm
-
Are k-means methods for sample clustering and/or gene expression clustering?
written by ecg1g15 •
-
GSVA score and 1-Pearson correlation results do not harmonize
written by aaragak1 •
-
will different proportion of control/patient samples affect gene's Pearson correlation?
written by hellocita •
-
analysis of clusters with Procksi
written by silvia.caprari84 •
-
How to cluster only genes with Cluster 3.0 ?
written by madkitty
-
Tutorial: How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
written by Michi
-
Grouping/Clustering Bam Files / Samples Based On Similarity/Any Other 'Distance' Metric
written by bav8718 •
-
Hierarchical Clustering Of Cbs-Segmentation (Cnv-Analysis)
written by Irsan
