Entering edit mode
10 months ago
houssi301
•
0
Hello guys, did anyone work with findfungi pipeline for metagenomics data before? Am using it right now and it doesn't seem to work since it uses kraken 0.10 beta and it's not available anymore so i tried using kraken2 but no solution, is that why it's not working ? Thanks!
The links to the 32 custom fungi datasets appears to still work. So, using those files you could build and host your own Kraken2 database. Depends on the format. Tutorial here if they are fasta files.
Alternatively, you could use one of the many Kraken2 databases that includes fungi.