Is there any way to access gnomAD data from R?
Hi. I have a question.
Is there any way to access 'gnomAD' data in R? I want to get the allele frequency of gnomAD data.
Is it possible? If there is a way, please let me know.
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link
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Ming Tommy Tang
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written
by
sooni •
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written
by
sooni •
1 answer
download gnomad VCFs and use a vcf library to access allele data for the variant
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Pierre Lindenbaum
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Related post:
this? https://bioconductor.org/packages/release/data/annotation/html/MafDb.gnomAD.r2.1.GRCh38.html or https://github.com/daynefiler/gnomadR