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GSEA documentation

Hi, I was wondering if there is a detailed documentation on what is GSEA and how it works .

Thanks

enrichment gene
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updated by biofalconch biofalconch • written by Eliza • Eliza

1 answer

Ming Tommy Tang just published a tutorial on how to do it and what it is :)

How to do GSEA in R for RNAseq data

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written by biofalconch biofalconch

biofalconch thank you , is there perhaps a paper expalining exactlywhat is GSEA and how GSEA works ? In context to my reaserch i have genes from my experiment and another predefined gene set associated with a skin disease I whish to examine if the genes from my expirement are enriched with the gene set from the skin disease , is GSEA the correct tool for that ?

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written by Eliza • Eliza

biofalconch, thank you :) also, I was wondering if there is a recommended R package that preforms GSEA in which I can input my expreriment gene data and the pre defined gene set also if there is an option to use this without gene expression information ? . the L and S here:enter image description here

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written by Eliza • Eliza

I guess most people use clusterProfiler, in the tutorial I mention above Tommy teaches how to use it :), also the documentation is ok to walk you through it

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written by biofalconch biofalconch

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